Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0022350

Physical Location & Seq

Genomic Coordinates Forward (+)

5475821 .. 5477284

Gene Structure 1464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1078000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAGACCATAGAAAAAGATTATGCAGCACAAGGGGCAACTGTGACTCCAAACAAGGACCCAATTGAACGTAAGCCTAAAGGGCAGACAATTATCATCTGTGTTTCAGGTGGTCCAGGTAGCGGAAAGAGTACGCAATGTGCTAAGATTGTTTCACACTTTGGGTTTTGCCATCTGAATGCTGGTGATCTTCTTGAAGCAGAAGCTGAGGCTGGATCTGAATACAGTAAGATGATCAAGGACTTTAAGAAGGAAAGACGACTGGTTCCTTCCGATTTGGTTGTCAAACTTCTGCAACAGGCAATGCAAAGGAGCCGAAACAAGAAGTTTCTTGTTGATGGCTTCCCGCGGAATGAAGAAAATATAGCTGCAGCTGAAAGAATTATGAAATTCAAGCCGGATTTTGTATTGTTTCTCTACTGCTCAGAAGGAGAAATGACGAGGTCTTTTAAACAGAAACCAGGAGTTGATGATAACATTGATACGATTCAGAAGCGTCATCAAGTTTATTTCGAATGCACCGTTCCTGTAGTCAATTATTACAGCGCCAAGGGAAAGGTTCGAAAGGTAACCATCTCCTCAAGGGCTTCTGCTCGTCGACATATAGCTAGTCTTACCATTGATGCTGAAAGGCCTCCTGAAGAAGTATTTGAGGTGGTCAAGGAAGCATTCTATGAGCTCGAAGAGAAGCGCGAGGAAAGCATGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004127 GO:0005488 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009129 GO:0009161 GO:0009165 GO:0009173 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046940 GO:0048046 GO:0050145 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK

Protein Analysis

237

Amino Acids

26.7

Weight (kDa)

8.48

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	33 - 153	2.4e-06	AAA domain
ADK	PF00406	35 - 185	2.9e-37	Adenylate kinase
AAA_17	PF13207	37 - 164	8.5e-26	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022350)

Species	Orthologous Gene IDs
malus_domestica	MD09G1078000.v1.1
prunus_persica	Prupe.3G246400_v2.0.a1 Prupe.3G246400_v2.0.a1 Prupe.3G246400_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	598
AccII	CGCG	2 cut(s)	349, 693
AciI	CCGC	3 cut(s)	123, 347, 349
AclWI	GGATC	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	68, 197, 394
AjnI	CCWGG	2 cut(s)	115, 460
AluBI	AGCT	5 cut(s)	206, 368, 374, 608, 679
AluI	AGCT	5 cut(s)	206, 368, 374, 608, 679
Alw21I	GWGCWC	1 cut(s)	681
AlwI	GGATC	1 cut(s)	223
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	632
ApeKI	GCWGC	3 cut(s)	26, 368, 371
ApoI	RAATTY	1 cut(s)	389
AspLEI	GCGC	2 cut(s)	548, 693
AspS9I	GGNCC	2 cut(s)	58, 113
AsuHPI	GGTGA	1 cut(s)	197
AsuII	TTCGAA	2 cut(s)	513, 562
AvaII	GGWCC	2 cut(s)	58, 113
BanII	GRGCYC	1 cut(s)	681
Bbv12I	GWGCWC	1 cut(s)	681
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	38, 355, 383
BccI	CCATC	3 cut(s)	180, 332, 581
BciT130I	CCWGG	2 cut(s)	117, 462
BclI	TGATCA	1 cut(s)	234
BfaI	CTAG	2 cut(s)	609, 709
BfmI	CTRYAG	2 cut(s)	369, 528
BfoI	RGCGCY	1 cut(s)	549
BglI	GCCNNNNNGGC	1 cut(s)	82
BisI	GCNGC	3 cut(s)	27, 369, 372
BlsI	GCNGC	3 cut(s)	28, 370, 373
Bme1390I	CCNGG	2 cut(s)	117, 462
Bme18I	GGWCC	2 cut(s)	58, 113
BmgT120I	GGNCC	2 cut(s)	58, 113
BmiI	GGNNCC	3 cut(s)	60, 267, 314
BmrFI	CCNGG	2 cut(s)	117, 462
BmsI	GCATC	1 cut(s)	613
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	2 cut(s)	513, 562
BpuEI	CTTGAG	1 cut(s)	565
BsaJI	CCNNGG	2 cut(s)	347, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	267
Bse3DI	GCAATG	2 cut(s)	143, 309
BseBI	CCWGG	2 cut(s)	117, 462
BseDI	CCNNGG	2 cut(s)	347, 549
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	2 cut(s)	143, 309
BseMII	CTCAG	2 cut(s)	198, 438
BseNI	ACTGG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	568
BseXI	GCAGC	3 cut(s)	38, 355, 383
Bsh1236I	CGCG	2 cut(s)	349, 693
BshFI	GGCC	1 cut(s)	634
BsiHKAI	GWGCWC	1 cut(s)	681
BsiSI	CCGG	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmI	GAATGC	3 cut(s)	184, 521, 668
BsnI	GGCC	1 cut(s)	634
Bsp119I	TTCGAA	2 cut(s)	513, 562
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	3 cut(s)	187, 215, 234
BspACI	CCGC	3 cut(s)	123, 347, 349
BspANI	GGCC	1 cut(s)	634
BspCNI	CTCAG	2 cut(s)	199, 437
BspFNI	CGCG	2 cut(s)	349, 693
BspLI	GGNNCC	3 cut(s)	60, 267, 314
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	223
BspT104I	TTCGAA	2 cut(s)	513, 562
BsrDI	GCAATG	2 cut(s)	143, 309
BsrI	ACTGG	1 cut(s)	267
BssECI	CCNNGG	2 cut(s)	347, 549
BssMI	GATC	3 cut(s)	187, 215, 234
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	2 cut(s)	117, 462
Bst4CI	ACNGT	3 cut(s)	43, 227, 523
Bst6I	CTCTTC	1 cut(s)	678
BstBI	TTCGAA	2 cut(s)	513, 562
BstC8I	GCNNGC	1 cut(s)	704
BstDEI	CTNAG	3 cut(s)	144, 207, 424
BstDSI	CCRYGG	1 cut(s)	347
BstEII	GGTNACC	1 cut(s)	568
BstFNI	CGCG	2 cut(s)	349, 693
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	2 cut(s)	548, 693
BstKTI	GATC	3 cut(s)	190, 218, 237
BstMBI	GATC	3 cut(s)	187, 215, 234
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 82, 699
BstNI	CCWGG	2 cut(s)	117, 462
BstNSI	RCATGY	1 cut(s)	706
BstPI	GGTNACC	1 cut(s)	568
BstSCI	CCNGG	2 cut(s)	115, 460
BstSFI	CTRYAG	2 cut(s)	369, 528
BstUI	CGCG	2 cut(s)	349, 693
BstV1I	GCAGC	3 cut(s)	38, 355, 383
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	634
BtgI	CCRYGG	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	704
CaiI	CAGNNNCTG	1 cut(s)	206
CfoI	GCGC	2 cut(s)	548, 693
Cfr13I	GGNCC	2 cut(s)	58, 113
Cfr42I	CCGCGG	1 cut(s)	350
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	1 cut(s)	703
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	3 cut(s)	144, 207, 424
DpnI	GATC	3 cut(s)	189, 217, 236
DpnII	GATC	3 cut(s)	187, 215, 234
DraI	TTTAAA	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
Ecl136II	GAGCTC	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	549
Eco147I	AGGCCT	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	681
Eco47I	GGWCC	2 cut(s)	58, 113
Eco53kI	GAGCTC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	660
Eco91I	GGTNACC	1 cut(s)	568
EcoICRI	GAGCTC	1 cut(s)	679
EcoO109I	RGGNCCY	1 cut(s)	58
EcoO65I	GGTNACC	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	115, 460
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	1 cut(s)	706
FaiI	YATR	8 cut(s)	11, 24, 365, 386, 603, 605, 675, 704
FatI	CATG	1 cut(s)	702
FauI	CCCGC	1 cut(s)	354
FbaI	TGATCA	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	3 cut(s)	27, 369, 372
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	3 cut(s)	27, 369, 372
FspBI	CTAG	2 cut(s)	609, 709
GlaI	GCGC	2 cut(s)	547, 692
GluI	GCNGC	3 cut(s)	27, 369, 372
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	1 cut(s)	634
HapII	CCGG	1 cut(s)	398
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	2 cut(s)	548, 693
Hin1II	CATG	1 cut(s)	706
Hin6I	GCGC	2 cut(s)	546, 691
HinP1I	GCGC	2 cut(s)	546, 691
HincII	GTYRAC	1 cut(s)	599
HindII	GTYRAC	1 cut(s)	599
HinfI	GANTC	2 cut(s)	46, 487
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	599
Hpy188I	TCNGA	5 cut(s)	177, 220, 274, 427, 492
Hpy188III	TCNNGA	2 cut(s)	194, 638
Hpy8I	GTNNAC	1 cut(s)	599
Hpy99I	CGWCG	1 cut(s)	600
HpyAV	CCTTC	3 cut(s)	244, 279, 422
HpyCH4III	ACNGT	3 cut(s)	43, 227, 523
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	5 cut(s)	26, 295, 307, 371, 519
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 82, 699
HpyF3I	CTNAG	3 cut(s)	144, 207, 424
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	1 cut(s)	706
HspAI	GCGC	2 cut(s)	546, 691
Ksp22I	TGATCA	1 cut(s)	234
KspI	CCGCGG	1 cut(s)	350
Kzo9I	GATC	3 cut(s)	187, 215, 234
LmnI	GCTCC	1 cut(s)	312
Lsp1109I	GCAGC	3 cut(s)	38, 355, 383
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	2 cut(s)	609, 709
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	43, 568
MalI	GATC	3 cut(s)	189, 217, 236
MboI	GATC	3 cut(s)	187, 215, 234
MboII	GAAGA	4 cut(s)	182, 368, 653, 695
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	5 cut(s)	63, 90, 381, 389, 535
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	6 cut(s)	202, 435, 589, 645, 646, 688
MseI	TTAA	2 cut(s)	246, 450
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	2 cut(s)	349, 374
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	117, 462
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	3 cut(s)	184, 521, 668
MvaI	CCWGG	2 cut(s)	117, 462
MvnI	CGCG	2 cut(s)	349, 693
MwoI	GCNNNNNNNGC	3 cut(s)	35, 82, 699
NdeII	GATC	3 cut(s)	187, 215, 234
NlaIII	CATG	1 cut(s)	706
NlaIV	GGNNCC	3 cut(s)	60, 267, 314
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	706
NspV	TTCGAA	2 cut(s)	513, 562
PaeI	GCATGC	1 cut(s)	706
PceI	AGGCCT	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PctI	GAATGC	3 cut(s)	184, 521, 668
PfeI	GAWTC	1 cut(s)	487
PflFI	GACNNNGTC	1 cut(s)	442
PkrI	GCNGC	3 cut(s)	28, 370, 373
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	681
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	115, 460
PspEI	GGTNACC	1 cut(s)	568
PspGI	CCWGG	2 cut(s)	115, 460
PspN4I	GGNNCC	3 cut(s)	60, 267, 314
PspPI	GGNCC	2 cut(s)	58, 113
PspPPI	RGGWCCY	1 cut(s)	58
PstI	CTGCAG	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	215
PsyI	GACNNNGTC	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
RseI	CAYNNNNRTG	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	681
SacII	CCGCGG	1 cut(s)	350
SalI	GTCGAC	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	246, 450
SatI	GCNGC	3 cut(s)	27, 369, 372
Sau3AI	GATC	3 cut(s)	187, 215, 234
Sau96I	GGNCC	2 cut(s)	58, 113
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	117, 462
SduI	GDGCHC	1 cut(s)	681
SfaNI	GCATC	1 cut(s)	613
SfcI	CTRYAG	2 cut(s)	369, 528
Sfr303I	CCGCGG	1 cut(s)	350
SfuI	TTCGAA	2 cut(s)	513, 562
SgrBI	CCGCGG	1 cut(s)	350
SinI	GGWCC	2 cut(s)	58, 113
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
SphI	GCATGC	1 cut(s)	706
Sse9I	AATT	5 cut(s)	63, 90, 381, 389, 535
SseBI	AGGCCT	1 cut(s)	634
SsiI	CCGC	3 cut(s)	123, 347, 349
SspMI	CTAG	2 cut(s)	609, 709
SstI	GAGCTC	1 cut(s)	681
StuI	AGGCCT	1 cut(s)	634
StyD4I	CCNGG	2 cut(s)	115, 460
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	3 cut(s)	43, 227, 523
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	4 cut(s)	513, 562, 598, 681
TasI	AATT	5 cut(s)	63, 90, 381, 389, 535
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	2 cut(s)	246, 450
Tru9I	TTAA	2 cut(s)	246, 450
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	3 cut(s)	26, 368, 371
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	369, 401
Tth111I	GACNNNGTC	1 cut(s)	442
VpaK11BI	GGWCC	2 cut(s)	58, 113
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	1 cut(s)	706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	598
XspI	CTAG	2 cut(s)	609, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.