MD09G1106400.v1.1
MYB Family

Transcription factor CPC-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
7706937 .. 7707844
908 bp
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UTR
Exon/CDS
Intron
MD09G1106400.v1.1.491

Sequence Viewer

Length: 147 bp
ATGGCTGACTTGGATCACTCCCACTCCACTTCTGACGACAACTCTGTGGATTCTAGAGAGGAAAGTAGTCAAGACTCTAAGCTTGAATTTTCAGAAGATGAGGAAACTCTAATCACTAGGATGTTTAATCTGGTTGGTGAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

49

Amino Acids

5.49

Weight (kDa)

4.14

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028453)

Species Orthologous Gene IDs
malus_domestica MD09G1106400.v1.1 MD17G1094200.v1.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 21
AcsI RAATTY 1 cut(s) 86
AgsI TTSAA 1 cut(s) 86
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
AlwI GGATC 1 cut(s) 21
ApoI RAATTY 1 cut(s) 86
BfaI CTAG 2 cut(s) 54, 117
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
BseGI GGATG 1 cut(s) 126
Bsp143I GATC 1 cut(s) 13
BspPI GGATC 1 cut(s) 21
BssMI GATC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 126
CviJI RGCY 2 cut(s) 5, 82
CviKI_1 RGCY 2 cut(s) 5, 82
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
FokI GGATG 1 cut(s) 133
FspBI CTAG 2 cut(s) 54, 117
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 2 cut(s) 50, 74
Hpy188I TCNGA 2 cut(s) 34, 94
Hpy188III TCNNGA 2 cut(s) 54, 71
HpyF3I CTNAG 1 cut(s) 78
Kzo9I GATC 1 cut(s) 13
LpnPI CCDG 1 cut(s) 116
MaeI CTAG 2 cut(s) 54, 117
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 1 cut(s) 107
MluCI AATT 1 cut(s) 86
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 3 cut(s) 52, 94, 135
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 119
NdeII GATC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 50
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 1 cut(s) 13
SchI GAGTC 1 cut(s) 68
SetI ASST 2 cut(s) 84, 146
SgeI CNNG 6 cut(s) 22, 66, 83, 95, 129, 143
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 1 cut(s) 86
SspMI CTAG 2 cut(s) 54, 117
TasI AATT 1 cut(s) 86
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
XapI RAATTY 1 cut(s) 86
XbaI TCTAGA 1 cut(s) 53
XspI CTAG 2 cut(s) 54, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.