Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0024314

Physical Location & Seq

Genomic Coordinates Reverse (-)

7730244 .. 7731130

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1106600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTGCATATACCACTATGTTAATGTTCTTTTACTCGACAATCTAATGTGCTACGTTGTGACAAATGCAGTGGACCATGTACAATCAGGGAATGTTGCCCTACAAACTGCAAAGAGCTTGCAGAAGAAGTCAAGAAAATGCATGATGATTTCCATAATCTTGATATTGATCATTGCATTGATCATCGTACTCTCTATTCTCAAGCCATGGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

73

Amino Acids

8.17

Weight (kDa)

9.56

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	20 - 63	4.3e-11	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0024314)

Species	Orthologous Gene IDs
malus_domestica	MD09G1106600.v1.1
prunus_persica	Prupe.3G219000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159811

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	81, 189
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	73
BclI	TGATCA	2 cut(s)	168, 180
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	185
BsaBI	GATNNNNATC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	171
Bse8I	GATNNNNATC	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	206
BseJI	GATNNNNATC	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	171
Bsp1407I	TGTACA	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	168, 180
Bsp19I	CCATGG	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	168, 180
BssT1I	CCWWGG	1 cut(s)	206
BstAUI	TGTACA	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	119
BstDSI	CCRYGG	1 cut(s)	206
BstKTI	GATC	2 cut(s)	171, 183
BstMBI	GATC	2 cut(s)	168, 180
BtgI	CCRYGG	1 cut(s)	206
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	80, 188
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	3 cut(s)	77, 142, 207
CviJI	RGCY	2 cut(s)	117, 205
CviKI_1	RGCY	2 cut(s)	117, 205
CviQI	GTAC	2 cut(s)	80, 188
DpnI	GATC	2 cut(s)	170, 182
DpnII	GATC	2 cut(s)	168, 180
Eco130I	CCWWGG	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	206
EcoT22I	ATGCAT	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	3 cut(s)	80, 145, 210
FaiI	YATR	7 cut(s)	8, 10, 18, 78, 143, 155, 208
FatI	CATG	3 cut(s)	76, 141, 206
FbaI	TGATCA	2 cut(s)	168, 180
FspEI	CC	9 cut(s)	26, 56, 72, 73, 89, 112, 113, 166, 193
Hin1II	CATG	3 cut(s)	80, 145, 210
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	132, 160
Hpy8I	GTNNAC	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	6 cut(s)	6, 68, 110, 121, 141, 176
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	80, 145, 210
Ksp22I	TGATCA	2 cut(s)	168, 180
Kzo9I	GATC	2 cut(s)	168, 180
LpnPI	CCDG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	170, 182
MboI	GATC	2 cut(s)	168, 180
MboII	GAAGA	1 cut(s)	136
Mph1103I	ATGCAT	1 cut(s)	143
MseI	TTAA	1 cut(s)	21
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	168, 180
NlaIII	CATG	3 cut(s)	80, 145, 210
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	73
RsaI	GTAC	2 cut(s)	81, 189
RsaNI	GTAC	2 cut(s)	80, 188
SaqAI	TTAA	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	168, 180
Sau96I	GGNCC	1 cut(s)	73
SetI	ASST	2 cut(s)	57, 119
SgeI	CNNG	8 cut(s)	47, 89, 99, 130, 144, 154, 172, 214
SinI	GGWCC	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	206
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	36
TatI	WGTACW	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspRI	CASTG	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	73
Zsp2I	ATGCAT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.