Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0028095

Physical Location & Seq

Genomic Coordinates Forward (+)

9711810 .. 9713071

Gene Structure 1262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1125800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGTCGGTCCCGCGCGGTCTCTCAGGCCGCCGTTGACAATCACAATCAGATTAGGGGAAAAAGAAAGAGAACGGCTTCGGGGGCGGAGGTGGCGGAGAACAGTAGCACAGCTCAGAAACCTGTGGCCCAAGAAATCAGCGAACCCAAAGGTGCTTTCTACCTTTGCAATTACTGCAACAAAGATATGTCTGGGAAAATTCGGATAAAGTGTGTGGTGTGTCCAGATTTTGACCTTTGCATTGAGTGCTTCTCTGTTGAAGCTGAGCTTACACCTCACAAATGCAATCACCCTTACAGGGTTATGGACAATTTGGCTTTTCCACTTATTTGTCCAGACTGGAATGTAGATGAAGAGATGCTACTGCTCGAGGGTATTGAAATGTATGGATTTGGGAATTGGACTGAAGTTTCTGAACATGTTGGAACGAAAACCAGACAACAATGTATTGATCATTATAAAGCTATATATATGAACTCTCCATACTTTCCTCTCCCAGTAAGACTAGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding ZZ

Protein Analysis

172

Amino Acids

19.41

Weight (kDa)

6.2

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZZ	PF00569	54 - 88	2.5e-08	Zinc finger, ZZ type
ZZ_ADA2	PF25299	56 - 102	1.8e-12	ADA2 ZZ-type zing finger
Myb_DNA-binding	PF00249	113 - 154	1.9e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	114 - 155	5.8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0028095)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40730
malus_domestica	MD09G1125800.v1.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AccII	CGCG	2 cut(s)	15, 17
AciI	CCGC	5 cut(s)	13, 17, 30, 86, 95
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	2 cut(s)	260, 380
AhlI	ACTAGT	1 cut(s)	505
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	4 cut(s)	113, 263, 268, 464
AluI	AGCT	4 cut(s)	113, 263, 268, 464
Alw26I	GTCTC	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	2 cut(s)	27, 126
ApoI	RAATTY	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	9, 127
AsuHPI	GGTGA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	9
BarI	GAAGNNNNNNTAC	2 cut(s)	345, 377
BceAI	ACGGC	2 cut(s)	17, 90
BclI	TGATCA	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	25
BcuI	ACTAGT	1 cut(s)	505
BfaI	CTAG	1 cut(s)	506
BisI	GCNGC	1 cut(s)	30
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	9
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	9, 127
BmiI	GGNNCC	1 cut(s)	11
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	491
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
Bpu1102I	GCTNAGC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	2 cut(s)	344, 497
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	3 cut(s)	38, 128, 255
BseNI	ACTGG	2 cut(s)	344, 497
Bsh1236I	CGCG	2 cut(s)	15, 17
BshFI	GGCC	2 cut(s)	29, 128
BsiHKCI	CYCGRG	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	29, 128
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	368
Bsp143I	GATC	1 cut(s)	451
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	5 cut(s)	13, 17, 30, 86, 95
BspANI	GGCC	2 cut(s)	29, 128
BspCNI	CTCAG	3 cut(s)	37, 127, 256
BspFNI	CGCG	2 cut(s)	15, 17
BspLI	GGNNCC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	344, 497
BssMI	GATC	1 cut(s)	451
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	348
BstAPI	GCANNNNNTGC	2 cut(s)	174, 246
BstDEI	CTNAG	3 cut(s)	24, 114, 264
BstFNI	CGCG	2 cut(s)	15, 17
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	1 cut(s)	454
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	451
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 92, 174, 246
BstNSI	RCATGY	1 cut(s)	422
BstUI	CGCG	2 cut(s)	15, 17
BsuRI	GGCC	2 cut(s)	29, 128
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	9, 127
CviAII	CATG	1 cut(s)	419
CviJI	RGCY	8 cut(s)	29, 77, 113, 128, 263, 268, 317, 464
CviKI_1	RGCY	8 cut(s)	29, 77, 113, 128, 263, 268, 317, 464
DdeI	CTNAG	3 cut(s)	24, 114, 264
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	2 cut(s)	101, 110
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	368
FaeI	CATG	1 cut(s)	422
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FatI	CATG	1 cut(s)	418
FauI	CCCGC	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	29, 128
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	422
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	4 cut(s)	51, 117, 204, 415
Hpy188III	TCNNGA	2 cut(s)	224, 335
Hpy8I	GTNNAC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	4 cut(s)	168, 177, 240, 285
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 92, 174, 246
HpyF3I	CTNAG	3 cut(s)	24, 114, 264
Hsp92II	CATG	1 cut(s)	422
HspAI	GCGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	1 cut(s)	451
LpnPI	CCDG	9 cut(s)	11, 135, 177, 237, 283, 325, 348, 448, 510
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	506
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MboII	GAAGA	1 cut(s)	365
MluCI	AATT	4 cut(s)	169, 198, 310, 397
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	4 cut(s)	82, 285, 364, 501
MroXI	GAANNNNTTC	1 cut(s)	76
MvnI	CGCG	2 cut(s)	15, 17
MwoI	GCNNNNNNNGC	4 cut(s)	83, 92, 174, 246
NdeII	GATC	1 cut(s)	451
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	1 cut(s)	11
NspI	RCATGY	1 cut(s)	422
PaeR7I	CTCGAG	1 cut(s)	368
PciI	ACATGT	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	31
PscI	ACATGT	1 cut(s)	418
PsiI	TTATAA	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	2 cut(s)	9, 127
PspXI	VCTCGAGB	1 cut(s)	368
PsrI	GAACNNNNNNTAC	2 cut(s)	467, 499
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	451
Sau96I	GGNCC	2 cut(s)	9, 127
SfaNI	GCATC	1 cut(s)	348
Sfr274I	CTCGAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SpeI	ACTAGT	1 cut(s)	505
Sse9I	AATT	4 cut(s)	169, 198, 310, 397
SsiI	CCGC	5 cut(s)	13, 17, 30, 86, 95
SspMI	CTAG	1 cut(s)	506
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	369
TasI	AATT	4 cut(s)	169, 198, 310, 397
TauI	GCSGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	366, 488
VpaK11BI	GGWCC	1 cut(s)	9
XapI	RAATTY	1 cut(s)	198
XceI	RCATGY	1 cut(s)	422
XhoI	CTCGAG	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	76
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.