MD09G1197200.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
17943144 .. 17944619
1476 bp
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UTR
Exon/CDS
Intron
MD09G1197200.v1.1.491

Sequence Viewer

Length: 225 bp
ATGCAAAATGGTCTTGTGAATCCTTGTTGTCGACCCACTTGGCAGACTGTGTTTTTTGACTTATCAAATTGGCTGGTTGATGTGAGGATGCATCTAAAGATTCGGAGTCTAAAGTGTATTCTTCTTCAGTGTGGAGTATCGCTGCTTCTACAAATAATTGTTGTGCTAAATCTTGGAACTAAGTGGCTTTATTTGTCTTTGAGCCTGATGATTTGGGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.62

Weight (kDa)

8.88

Isoelectric Point (pI)

25.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028469)

Species Orthologous Gene IDs
malus_domestica MD09G1197200.v1.1
pyrus_communis pycom01g02400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 142
BarI GAAGNNNNNNTAC 2 cut(s) 129, 161
BbvI GCAGC 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 212
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
BmsI GCATC 2 cut(s) 78, 100
BseGI GGATG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 134
CviJI RGCY 3 cut(s) 73, 187, 204
CviKI_1 RGCY 3 cut(s) 73, 187, 204
DdeI CTNAG 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 110
EcoT22I ATGCAT 1 cut(s) 93
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 143
HincII GTYRAC 1 cut(s) 32
HindII GTYRAC 1 cut(s) 32
HinfI GANTC 3 cut(s) 19, 100, 106
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 105
Hpy8I GTNNAC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 4, 91
HpyF3I CTNAG 1 cut(s) 180
LpnPI CCDG 2 cut(s) 59, 218
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 2 cut(s) 78, 100
MboII GAAGA 2 cut(s) 113, 116
MluCI AATT 2 cut(s) 67, 156
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 1 cut(s) 78
Mph1103I ATGCAT 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 93
PfeI GAWTC 2 cut(s) 19, 100
PkrI GCNGC 1 cut(s) 144
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
SalI GTCGAC 1 cut(s) 30
SatI GCNGC 1 cut(s) 143
SchI GAGTC 1 cut(s) 115
SfaNI GCATC 2 cut(s) 78, 100
SgeI CNNG 6 cut(s) 26, 36, 51, 86, 185, 217
Sse9I AATT 2 cut(s) 67, 156
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 1 cut(s) 31
TasI AATT 2 cut(s) 67, 156
TfiI GAWTC 2 cut(s) 19, 100
TscAI CASTG 1 cut(s) 134
TseI GCWGC 1 cut(s) 142
TspRI CASTG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 31
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.