Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0028450

Physical Location & Seq

Genomic Coordinates Reverse (-)

20571786 .. 20573605

Gene Structure 1820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1211000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGATCTTCTGGGAAAATTGAGGTTTCGATTTCTGATACTCTGGTTCTGCGTTTTTGTCTCTCTCAAGATTGCAAATGCTGAAACGGAGAGTAGAAGTTTAAGCTTCTTTAGATGGCCTCCCTTGAAAATTGTACGAGAAGTGGTTGACAAACTGTTCCAAGCCAGGCCTGATGTGGCCCCTGCTCTCCTGCGCCTTGTCTTCCATGACTGCTTCATCCAGATTCTCGATGTAATCGACACGATCAAGTCAGAGCTTGAAAAACAAGAGATTGTGTTGCATTGGCTGGTGGCCCCTTCTATCCTTTGCATACTGGAAGGAAAGAGCACTCTTTCTTTCCGTGACCTTGCAACATATGAGCTTCCTTATCCGGAAGATGATCTGCCGCAGACGCTTGCATCCTTTGCATCAAGGGGATTTGATGAAAGAGAAACTGTCAGCCTCTTCGGTGCTCACAGCATTGGAATGATCCAGTGCCAATTCTTCGAAAACCGTCTCTACAATTTCAGTGGTACTCATAAGCCGGACCCATCTTTGGATGTTGAATTCCTTCGCCTCATGAGATCAAGATGCAACAACAGTCACTCGGTACCTGCTCCAGCACAAAACCCTCCTTTTTACGGATTTGTGTCATCAACGAGAGCACCATCCCAATTCCACATAAACTCGCAGCAACCCTCATCTGAGGAGGCAGGAATGGCAATGGAATATGAGGGACCTAGATCAGCTTTTGGCACCGTGTACTACCGGAATCTTTTGCAAGGCAAAGGAATCCTCTATGCTGATCAGCAGCTGACGATTAGGGCAGAAACTTGCAATTGGGTTACAGCATATGCTTTTGATGCCTACTTGTTCCGTCGTGATTTTGCCATGGCAATGATGAAGCTGTCGGACCTCCAAGTCTTGACAACACCAATGGGTCAGATCCGGCTCAATTGTTCAAAAGCGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

318

Amino Acids

36.23

Weight (kDa)

6.32

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	119 - 280	2.1e-23	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028450)

Species	Orthologous Gene IDs
malus_domestica	MD09G1211000.v1.1
pyrus_communis	pycom09g12860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	899
Acc36I	ACCTGC	1 cut(s)	601
Acc65I	GGTACC	1 cut(s)	589
AccB1I	GGYRCC	2 cut(s)	589, 734
AccIII	TCCGGA	1 cut(s)	370
AciI	CCGC	2 cut(s)	386, 947
AclWI	GGATC	3 cut(s)	12, 463, 919
AcsI	RAATTY	1 cut(s)	545
AfaI	GTAC	4 cut(s)	135, 514, 591, 743
AfiI	CCNNNNNNNGG	2 cut(s)	535, 620
AgsI	TTSAA	4 cut(s)	127, 260, 545, 942
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	6 cut(s)	105, 256, 361, 728, 793, 886
AluI	AGCT	6 cut(s)	105, 256, 361, 728, 793, 886
Alw21I	GWGCWC	3 cut(s)	329, 454, 646
Alw26I	GTCTC	2 cut(s)	64, 500
AlwI	GGATC	3 cut(s)	12, 463, 919
AlwNI	CAGNNNCTG	1 cut(s)	793
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	4 cut(s)	116, 167, 177, 291
ApeKI	GCWGC	2 cut(s)	670, 790
ApoI	RAATTY	1 cut(s)	545
Asp700I	GAANNNNTTC	1 cut(s)	549
Asp718I	GGTACC	1 cut(s)	589
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	5 cut(s)	178, 292, 526, 716, 892
AsuII	TTCGAA	1 cut(s)	486
AvaII	GGWCC	3 cut(s)	526, 716, 892
BaeI	ACNNNNGTAYC	2 cut(s)	29, 62
BanI	GGYRCC	2 cut(s)	589, 734
BbsI	GAAGAC	1 cut(s)	193
Bbv12I	GWGCWC	3 cut(s)	329, 454, 646
BbvI	GCAGC	2 cut(s)	682, 802
BccI	CCATC	3 cut(s)	108, 538, 655
BciT130I	CCWGG	1 cut(s)	166
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	2 cut(s)	64, 500
BfaI	CTAG	1 cut(s)	720
BfuAI	ACCTGC	1 cut(s)	601
BisI	GCNGC	3 cut(s)	386, 671, 791
BlsI	GCNGC	3 cut(s)	387, 672, 792
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	3 cut(s)	526, 716, 892
BmgT120I	GGNCC	5 cut(s)	178, 292, 526, 716, 892
BmiI	GGNNCC	6 cut(s)	180, 294, 528, 591, 717, 736
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	4 cut(s)	407, 416, 560, 832
BpiI	GAAGAC	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	582
Bpu14I	TTCGAA	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	870
BsaWI	WCCGGW	2 cut(s)	370, 747
Bsc4I	CCNNNNNNNGG	2 cut(s)	535, 620
Bse1I	ACTGG	2 cut(s)	318, 472
Bse3DI	GCAATG	2 cut(s)	708, 882
BseAI	TCCGGA	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	870
BseGI	GGATG	4 cut(s)	216, 398, 544, 647
BseLI	CCNNNNNNNGG	2 cut(s)	535, 620
BseMI	GCAATG	2 cut(s)	708, 882
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	2 cut(s)	318, 472
BseRI	GAGGAG	1 cut(s)	701
BseXI	GCAGC	2 cut(s)	682, 802
BshFI	GGCC	4 cut(s)	118, 169, 179, 293
BshNI	GGYRCC	2 cut(s)	589, 734
BsiHKAI	GWGCWC	3 cut(s)	329, 454, 646
BsiSI	CCGG	4 cut(s)	371, 524, 748, 928
BslFI	GGGAC	1 cut(s)	729
BslI	CCNNNNNNNGG	2 cut(s)	535, 620
BsmAI	GTCTC	2 cut(s)	64, 500
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	729
BsnI	GGCC	4 cut(s)	118, 169, 179, 293
Bsp119I	TTCGAA	1 cut(s)	486
Bsp1286I	GDGCHC	3 cut(s)	329, 454, 646
Bsp13I	TCCGGA	1 cut(s)	370
Bsp143I	GATC	8 cut(s)	4, 243, 379, 468, 563, 722, 784, 924
Bsp19I	CCATGG	1 cut(s)	870
BspACI	CCGC	2 cut(s)	386, 947
BspANI	GGCC	4 cut(s)	118, 169, 179, 293
BspCNI	CTCAG	1 cut(s)	676
BspEI	TCCGGA	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	6 cut(s)	180, 294, 528, 591, 717, 736
BspMI	ACCTGC	1 cut(s)	601
BspPI	GGATC	3 cut(s)	12, 463, 919
BspT104I	TTCGAA	1 cut(s)	486
BspT107I	GGYRCC	2 cut(s)	589, 734
BsrDI	GCAATG	2 cut(s)	708, 882
BsrI	ACTGG	2 cut(s)	318, 472
BssECI	CCNNGG	1 cut(s)	870
BssMI	GATC	8 cut(s)	4, 243, 379, 468, 563, 722, 784, 924
BssT1I	CCWWGG	1 cut(s)	870
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	5 cut(s)	156, 436, 494, 581, 739
Bst6I	CTCTTC	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstBI	TTCGAA	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	684
BstDSI	CCRYGG	1 cut(s)	870
BstF5I	GGATG	4 cut(s)	216, 398, 544, 647
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	8 cut(s)	7, 246, 382, 471, 566, 725, 787, 927
BstMAI	GTCTC	2 cut(s)	64, 500
BstMBI	GATC	8 cut(s)	4, 243, 379, 468, 563, 722, 784, 924
BstMWI	GCNNNNNNNGC	4 cut(s)	391, 404, 698, 842
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	682, 802
BstV2I	GAAGAC	1 cut(s)	193
BstX2I	RGATCY	2 cut(s)	4, 924
BstYI	RGATCY	2 cut(s)	4, 924
BsuRI	GGCC	4 cut(s)	118, 169, 179, 293
BtgI	CCRYGG	1 cut(s)	870
BtsCI	GGATG	4 cut(s)	216, 398, 544, 647
BtsIMutI	CAGTG	2 cut(s)	479, 514
BveI	ACCTGC	1 cut(s)	601
Cac8I	GCNNGC	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	793
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	5 cut(s)	178, 292, 526, 716, 892
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	4 cut(s)	134, 513, 590, 742
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	3 cut(s)	206, 559, 871
CviQI	GTAC	4 cut(s)	134, 513, 590, 742
DdeI	CTNAG	1 cut(s)	684
DpnI	GATC	8 cut(s)	6, 245, 381, 470, 565, 724, 786, 926
DpnII	GATC	8 cut(s)	4, 243, 379, 468, 563, 722, 784, 924
DrdI	GACNNNNNNGTC	1 cut(s)	899
DseDI	GACNNNNNNGTC	1 cut(s)	899
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco130I	CCWWGG	1 cut(s)	870
Eco147I	AGGCCT	1 cut(s)	169
Eco47I	GGWCC	3 cut(s)	526, 716, 892
EcoO109I	RGGNCCY	1 cut(s)	716
EcoRI	GAATTC	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	870
ErhI	CCWWGG	1 cut(s)	870
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	3 cut(s)	209, 562, 874
FaqI	GGGAC	1 cut(s)	729
FatI	CATG	3 cut(s)	205, 558, 870
FauNDI	CATATG	2 cut(s)	355, 832
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	3 cut(s)	386, 671, 791
FokI	GGATG	4 cut(s)	203, 385, 551, 634
Fsp4HI	GCNGC	3 cut(s)	386, 671, 791
FspBI	CTAG	1 cut(s)	720
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	3 cut(s)	386, 671, 791
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	4 cut(s)	118, 169, 179, 293
HapII	CCGG	4 cut(s)	371, 524, 748, 928
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	209, 562, 874
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	3 cut(s)	223, 751, 771
HpaII	CCGG	4 cut(s)	371, 524, 748, 928
Hpy166II	GTNNAC	2 cut(s)	148, 742
Hpy188I	TCNGA	5 cut(s)	36, 253, 685, 892, 924
Hpy188III	TCNNGA	8 cut(s)	67, 220, 227, 371, 559, 567, 860, 904
Hpy8I	GTNNAC	2 cut(s)	148, 742
Hpy99I	CGWCG	1 cut(s)	861
HpyAV	CCTTC	3 cut(s)	306, 311, 560
HpyCH4III	ACNGT	5 cut(s)	156, 436, 494, 581, 739
HpyCH4V	TGCA	9 cut(s)	74, 280, 309, 350, 398, 407, 573, 760, 816
HpyF10VI	GCNNNNNNNGC	4 cut(s)	391, 404, 698, 842
HpyF3I	CTNAG	1 cut(s)	684
Hsp92II	CATG	3 cut(s)	209, 562, 874
HspAI	GCGC	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	370
KpnI	GGTACC	1 cut(s)	593
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	8 cut(s)	4, 243, 379, 468, 563, 722, 784, 924
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	2 cut(s)	682, 802
LweI	GCATC	4 cut(s)	407, 416, 560, 832
MaeI	CTAG	1 cut(s)	720
MaeIII	GTNAC	3 cut(s)	341, 581, 823
MalI	GATC	8 cut(s)	6, 245, 381, 470, 565, 724, 786, 926
MboI	GATC	8 cut(s)	4, 243, 379, 468, 563, 722, 784, 924
MboII	GAAGA	4 cut(s)	193, 386, 436, 475
MfeI	CAATTG	2 cut(s)	817, 934
MflI	RGATCY	2 cut(s)	4, 924
MhlI	GDGCHC	3 cut(s)	329, 454, 646
MluCI	AATT	8 cut(s)	17, 129, 479, 502, 545, 653, 817, 934
MmeI	TCCRAC	1 cut(s)	870
MroI	TCCGGA	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	464, 875
MspA1I	CMGCKG	1 cut(s)	793
MspI	CCGG	4 cut(s)	371, 524, 748, 928
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	2 cut(s)	817, 934
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	4 cut(s)	391, 404, 698, 842
NcoI	CCATGG	1 cut(s)	870
NdeI	CATATG	2 cut(s)	355, 832
NdeII	GATC	8 cut(s)	4, 243, 379, 468, 563, 722, 784, 924
NlaIII	CATG	3 cut(s)	209, 562, 874
NlaIV	GGNNCC	6 cut(s)	180, 294, 528, 591, 717, 736
NmuCI	GTSAC	2 cut(s)	341, 581
NspV	TTCGAA	1 cut(s)	486
PagI	TCATGA	1 cut(s)	558
PceI	AGGCCT	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	3 cut(s)	223, 751, 771
PkrI	GCNGC	3 cut(s)	387, 672, 792
PpuMI	RGGWCCY	1 cut(s)	716
Psp5II	RGGWCCY	1 cut(s)	716
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	6 cut(s)	180, 294, 528, 591, 717, 736
PspPI	GGNCC	5 cut(s)	178, 292, 526, 716, 892
PspPPI	RGGWCCY	1 cut(s)	716
PstNI	CAGNNNCTG	1 cut(s)	793
PsuI	RGATCY	2 cut(s)	4, 924
PvuII	CAGCTG	1 cut(s)	793
RsaI	GTAC	4 cut(s)	135, 514, 591, 743
RsaNI	GTAC	4 cut(s)	134, 513, 590, 742
RseI	CAYNNNNRTG	2 cut(s)	464, 875
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	3 cut(s)	386, 671, 791
Sau3AI	GATC	8 cut(s)	4, 243, 379, 468, 563, 722, 784, 924
Sau96I	GGNCC	5 cut(s)	178, 292, 526, 716, 892
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	3 cut(s)	329, 454, 646
SfaNI	GCATC	4 cut(s)	407, 416, 560, 832
SfuI	TTCGAA	1 cut(s)	486
SinI	GGWCC	3 cut(s)	526, 716, 892
SmiMI	CAYNNNNRTG	2 cut(s)	464, 875
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	8 cut(s)	17, 129, 479, 502, 545, 653, 817, 934
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	2 cut(s)	386, 947
SspMI	CTAG	1 cut(s)	720
StuI	AGGCCT	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	870
TaaI	ACNGT	5 cut(s)	156, 436, 494, 581, 739
TaqI	TCGA	4 cut(s)	28, 228, 237, 486
TasI	AATT	8 cut(s)	17, 129, 479, 502, 545, 653, 817, 934
TatI	WGTACW	1 cut(s)	741
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	3 cut(s)	223, 751, 771
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	2 cut(s)	479, 514
TseFI	GTSAC	2 cut(s)	341, 581
TseI	GCWGC	2 cut(s)	670, 790
Tsp45I	GTSAC	2 cut(s)	341, 581
TspDTI	ATGAA	3 cut(s)	205, 438, 896
TspGWI	ACGGA	4 cut(s)	101, 329, 636, 845
TspRI	CASTG	2 cut(s)	479, 514
VpaK11BI	GGWCC	3 cut(s)	526, 716, 892
XapI	RAATTY	1 cut(s)	545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.