Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0028440

Physical Location & Seq

Genomic Coordinates Forward (+)

34401879 .. 34407046

Gene Structure 5168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1269700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGGTTATGTCACAAGCTCTGCTATCCTTCCTGTTCTGATGGGGAAGGGAGGGTTGATTGTTAGCGATTCTTTGAACCACAGCTCCATTGTCAATGGCACAAGAGGATCTGGAGCTAGAGTTTGTGTTTTCCAACACAATAGTGGATTACCAAAAGGAGCTCATCAAGTATTTTGCGAGCACGATCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0012505 GO:0016020 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

65

Amino Acids

6.69

Weight (kDa)

8.84

Isoelectric Point (pI)

16.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028440)

Species	Orthologous Gene IDs
malus_domestica	MD09G1269700.v1.1
pyrus_communis	pycom05g11160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	76
AleI	CACNNNNGTG	1 cut(s)	141
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
AluBI	AGCT	4 cut(s)	18, 84, 116, 161
AluI	AGCT	4 cut(s)	18, 84, 116, 161
Alw21I	GWGCWC	2 cut(s)	163, 183
AlwI	GGATC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	2 cut(s)	163, 183
BccI	CCATC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	132
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 105, 135
Bsh1285I	CGRYCG	1 cut(s)	187
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	163, 183
Bsp1286I	GDGCHC	2 cut(s)	163, 183
Bsp143I	GATC	2 cut(s)	107, 184
BspPI	GGATC	1 cut(s)	115
BssMI	GATC	2 cut(s)	107, 184
BstC8I	GCNNGC	1 cut(s)	179
BstKTI	GATC	2 cut(s)	110, 187
BstMBI	GATC	2 cut(s)	107, 184
BstMCI	CGRYCG	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	179
CviJI	RGCY	4 cut(s)	18, 84, 116, 161
CviKI_1	RGCY	4 cut(s)	18, 84, 116, 161
DpnI	GATC	2 cut(s)	109, 186
DpnII	GATC	2 cut(s)	107, 184
Ecl136II	GAGCTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	163
FaiI	YATR	1 cut(s)	9
FriOI	GRGCYC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	132
HinfI	GANTC	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	111
HpyAV	CCTTC	2 cut(s)	38, 40
Kzo9I	GATC	2 cut(s)	107, 184
LmnI	GCTCC	3 cut(s)	89, 113, 158
LpnPI	CCDG	2 cut(s)	45, 96
MaeI	CTAG	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	109, 186
MboI	GATC	2 cut(s)	107, 184
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	2 cut(s)	163, 183
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	2 cut(s)	44, 98
MslI	CAYNNNNRTG	1 cut(s)	141
NdeII	GATC	2 cut(s)	107, 184
NmuCI	GTSAC	1 cut(s)	10
OliI	CACNNNNGTG	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	68
Ple19I	CGATCG	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	107
PvuI	CGATCG	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	163
Sau3AI	GATC	2 cut(s)	107, 184
SduI	GDGCHC	2 cut(s)	163, 183
SetI	ASST	5 cut(s)	20, 86, 118, 163, 193
SgeI	CNNG	7 cut(s)	27, 44, 114, 123, 129, 179, 190
SmiMI	CAYNNNNRTG	1 cut(s)	141
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	163
TaqI	TCGA	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.