Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0028445

Physical Location & Seq

Genomic Coordinates Reverse (-)

36754998 .. 36757174

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1287600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGATGCGTGTTGTTGTACAGCCAGCTATGGGAAAATCTAAAATAGAAATCAATTCAATGAACTTCAATTTGATGATGGAATGCCAGGAAAATGCAGTGGAGAGCCTTCTCTCGCTCTCAAATCTAGCAAATCGCGCCAGACCACGGGTCCATCCGCACCACCAACGTTCCTCCGCTTTAGTGAAGGTAAGCGATCCATCCTACTCTAAATTTCAGAATTTTGGGGGATTTTGTTTCCTTTTCAATACCAATCAGGGTTTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0032787 GO:0034641 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0046983 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

89

Amino Acids

9.94

Weight (kDa)

9.59

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028445)

Species	Orthologous Gene IDs
malus_domestica	MD09G1287600.v1.1
pyrus_communis	pycom04g04950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	135
AciI	CCGC	2 cut(s)	155, 174
AclI	AACGTT	1 cut(s)	166
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	2 cut(s)	209, 217
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	29, 144
AgsI	TTSAA	3 cut(s)	57, 67, 244
AhdI	GACNNNNNGTC	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
AlwI	GGATC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	209, 217
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	148
BccI	CCATC	3 cut(s)	70, 159, 205
BciT130I	CCWGG	1 cut(s)	86
BfaI	CTAG	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	148
BmeRI	GACNNNNNGTC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 144
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	2 cut(s)	151, 197
BseLI	CCNNNNNNNGG	2 cut(s)	29, 144
Bsh1236I	CGCG	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	29, 144
BsmI	GAATGC	1 cut(s)	86
Bsp1407I	TGTACA	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	2 cut(s)	155, 174
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	86
BstAUI	TGTACA	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	151, 197
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	151, 197
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	17
CviJI	RGCY	3 cut(s)	22, 26, 105
CviKI_1	RGCY	3 cut(s)	22, 26, 105
CviQI	GTAC	1 cut(s)	17
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
DriI	GACNNNNNGTC	1 cut(s)	146
Eam1105I	GACNNNNNGTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	84
FaiI	YATR	1 cut(s)	29
FokI	GGATG	2 cut(s)	138, 184
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	216
HpyAV	CCTTC	2 cut(s)	116, 178
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	166
HspAI	GCGC	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	193
LpnPI	CCDG	5 cut(s)	36, 71, 98, 151, 239
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	166
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MluCI	AATT	5 cut(s)	52, 67, 209, 217, 261
MnlI	CCTC	1 cut(s)	181
MseI	TTAA	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	86
Psp1406I	AACGTT	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	260
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	3 cut(s)	28, 169, 189
SinI	GGWCC	1 cut(s)	148
Sse9I	AATT	5 cut(s)	52, 67, 209, 217, 261
SsiI	CCGC	2 cut(s)	155, 174
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	84
TaiI	ACGT	1 cut(s)	169
TasI	AATT	5 cut(s)	52, 67, 209, 217, 261
TatI	WGTACW	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	1 cut(s)	102
TspDTI	ATGAA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	2 cut(s)	209, 217
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.