Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0028162

Physical Location & Seq

Genomic Coordinates Reverse (-)

3848982 .. 3849580

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1029300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAGGGACAGGGATGTTTTTATCTGGAGCTCGATGATTGCAGGATTTGGAGTTAATGGACAAGGAGGAGAAGCTTTAAAAGTATTTGATCGGATGGTTAAGCACTCAGCTGTCAAGCCTGATGATCCCGGACCTAAGCACTACGGGATACTTGTTGATCTTTTTGGCCGGGCAGGAGAGCTGGAAAAGGCCTTGGAAATTGTTGAGCGCTTGCCAAATCCTGCTGCGCCCAATGTTTGGGGAGCCTTGCTTGGTGCTTGCCGGATCCATAACAAAGCAAAGCTTGGAGAGGTTGCAGCGAAGAATCTTATCCGGTTAGATCCCAAACATGAGGGGCATTACATTTTGCTCTCGAATATATACGCCATTGACAATAATTGGGAAAATATGGCAAATCTCAGAAATTTGATAAAGGAGAAGGGGTTAAAGGCGATGTCAGGGCAGAGCATGGTTGAGGCGGCAGTTGAGGCAGTTGCTATTAAAATTGATAGTTCCGGCGGGCGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

170

Amino Acids

18.45

Weight (kDa)

7.87

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	8 - 35	9e-07	PPR repeat
E_motif	PF20431	90 - 152	7.1e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028162)

Species	Orthologous Gene IDs
malus_domestica	MD10G1029300.v1.1
pyrus_communis	pycom10g01950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	237
AccII	CGCG	1 cut(s)	504
AciI	CCGC	2 cut(s)	458, 498
AclWI	GGATC	4 cut(s)	119, 259, 272, 314
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	403
AfeI	AGCGCT	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	237
AluBI	AGCT	5 cut(s)	30, 74, 110, 181, 283
AluI	AGCT	5 cut(s)	30, 74, 110, 181, 283
Alw21I	GWGCWC	1 cut(s)	32
AlwI	GGATC	4 cut(s)	119, 259, 272, 314
Aor51HI	AGCGCT	1 cut(s)	209
AoxI	GGCC	2 cut(s)	166, 189
ApeKI	GCWGC	2 cut(s)	224, 296
ApoI	RAATTY	1 cut(s)	403
AspLEI	GCGC	3 cut(s)	210, 229, 504
AspS9I	GGNCC	1 cut(s)	131
AsuC2I	CCSGG	2 cut(s)	129, 170
AvaII	GGWCC	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	211, 308
BccI	CCATC	1 cut(s)	88
BciVI	GTATCC	1 cut(s)	141
BcnI	CCSGG	2 cut(s)	129, 170
BfoI	RGCGCY	1 cut(s)	211
BfuI	GTATCC	1 cut(s)	141
BisI	GCNGC	3 cut(s)	225, 297, 459
BlsI	GCNGC	3 cut(s)	226, 298, 460
Bme1390I	CCNGG	2 cut(s)	129, 170
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	244, 266
BmrFI	CCNGG	2 cut(s)	129, 170
BpmI	CTGGAG	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	135
BpuMI	CCSGG	2 cut(s)	129, 170
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	2 cut(s)	19, 99
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	120, 412
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	211, 308
Bsh1236I	CGCG	1 cut(s)	504
BshFI	GGCC	2 cut(s)	168, 191
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	5 cut(s)	129, 169, 262, 313, 495
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	168, 191
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	5 cut(s)	88, 124, 157, 264, 319
BspACI	CCGC	2 cut(s)	458, 498
BspANI	GGCC	2 cut(s)	168, 191
BspCNI	CTCAG	2 cut(s)	119, 411
BspFNI	CGCG	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	244, 266
BspPI	GGATC	4 cut(s)	119, 259, 272, 314
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	5 cut(s)	88, 124, 157, 264, 319
BssT1I	CCWWGG	1 cut(s)	192
BstC8I	GCNNGC	3 cut(s)	212, 259, 500
BstDEI	CTNAG	3 cut(s)	106, 135, 398
BstF5I	GGATG	2 cut(s)	19, 99
BstFNI	CGCG	1 cut(s)	504
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	3 cut(s)	210, 229, 504
BstKTI	GATC	5 cut(s)	91, 127, 160, 267, 322
BstMBI	GATC	5 cut(s)	88, 124, 157, 264, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	127, 168
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	2 cut(s)	211, 308
BstX2I	RGATCY	2 cut(s)	264, 319
BstYI	RGATCY	2 cut(s)	264, 319
BsuI	GTATCC	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	168, 191
BtgZI	GCGATG	1 cut(s)	446
BtsCI	GGATG	2 cut(s)	19, 99
Cac8I	GCNNGC	3 cut(s)	212, 259, 500
CfoI	GCGC	3 cut(s)	210, 229, 504
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	2 cut(s)	329, 448
CviJI	RGCY	9 cut(s)	30, 74, 110, 118, 168, 181, 191, 245, 283
CviKI_1	RGCY	9 cut(s)	30, 74, 110, 118, 168, 181, 191, 245, 283
DdeI	CTNAG	3 cut(s)	106, 135, 398
DpnI	GATC	5 cut(s)	90, 126, 159, 266, 321
DpnII	GATC	5 cut(s)	88, 124, 157, 264, 319
DraI	TTTAAA	1 cut(s)	78
EaeI	YGGCCR	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	131
Eco47III	AGCGCT	1 cut(s)	209
Eco53kI	GAGCTC	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	2 cut(s)	332, 451
FaiI	YATR	6 cut(s)	270, 330, 359, 361, 389, 449
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	328, 447
FauI	CCCGC	1 cut(s)	491
Fnu4HI	GCNGC	3 cut(s)	225, 297, 459
FokI	GGATG	2 cut(s)	26, 106
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	3 cut(s)	225, 297, 459
GlaI	GCGC	3 cut(s)	209, 228, 503
GluI	GCNGC	3 cut(s)	225, 297, 459
GsuI	CTGGAG	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	168, 191
HapII	CCGG	5 cut(s)	129, 169, 262, 313, 495
HhaI	GCGC	3 cut(s)	210, 229, 504
Hin1II	CATG	2 cut(s)	332, 451
Hin6I	GCGC	3 cut(s)	208, 227, 502
HinP1I	GCGC	3 cut(s)	208, 227, 502
HindIII	AAGCTT	2 cut(s)	72, 281
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	5 cut(s)	129, 169, 262, 313, 495
Hpy188I	TCNGA	2 cut(s)	93, 401
Hpy188III	TCNNGA	2 cut(s)	25, 352
HpyAV	CCTTC	1 cut(s)	412
HpyCH4V	TGCA	2 cut(s)	41, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	3 cut(s)	106, 135, 398
Hsp92II	CATG	2 cut(s)	332, 451
HspAI	GCGC	3 cut(s)	208, 227, 502
Kzo9I	GATC	5 cut(s)	88, 124, 157, 264, 319
LmnI	GCTCC	2 cut(s)	27, 242
Lsp1109I	GCAGC	2 cut(s)	211, 308
MalI	GATC	5 cut(s)	90, 126, 159, 266, 321
MboI	GATC	5 cut(s)	88, 124, 157, 264, 319
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	2 cut(s)	264, 319
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	4 cut(s)	198, 376, 403, 483
MnlI	CCTC	5 cut(s)	59, 283, 325, 448, 460
MseI	TTAA	5 cut(s)	54, 77, 99, 425, 480
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	5 cut(s)	129, 169, 262, 313, 495
MspR9I	CCNGG	2 cut(s)	129, 170
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	1 cut(s)	467
NciI	CCSGG	2 cut(s)	129, 170
NdeII	GATC	5 cut(s)	88, 124, 157, 264, 319
NlaIII	CATG	2 cut(s)	332, 451
NlaIV	GGNNCC	2 cut(s)	244, 266
PceI	AGGCCT	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	304
PflMI	CCANNNNNTGG	1 cut(s)	237
PfoI	TCCNGGA	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	226, 298, 460
Psp124BI	GAGCTC	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	244, 266
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	264, 319
PvuII	CAGCTG	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	5 cut(s)	54, 77, 99, 425, 480
SatI	GCNGC	3 cut(s)	225, 297, 459
Sau3AI	GATC	5 cut(s)	88, 124, 157, 264, 319
Sau96I	GGNCC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	129, 170
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	7 cut(s)	32, 76, 112, 136, 183, 285, 294
SinI	GGWCC	1 cut(s)	131
Sse9I	AATT	4 cut(s)	198, 376, 403, 483
SseBI	AGGCCT	1 cut(s)	191
SsiI	CCGC	2 cut(s)	458, 498
SstI	GAGCTC	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	127, 168
StyI	CCWWGG	1 cut(s)	192
TaqI	TCGA	2 cut(s)	32, 353
TasI	AATT	4 cut(s)	198, 376, 403, 483
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	5 cut(s)	54, 77, 99, 425, 480
Tru9I	TTAA	5 cut(s)	54, 77, 99, 425, 480
TseI	GCWGC	2 cut(s)	224, 296
Van91I	CCANNNNNTGG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.