MD10G1068300.v1.1

Protein translation factor SUI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0028229
Physical Location & Seq
Reverse (-)
9403024 .. 9404142
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1068300.v1.1.491

Sequence Viewer

Length: 402 bp
ATGATTGACCCAGACGTTCAGATCGCAACTACTGTTGACCCTCTAGCTGACACAGGAGATATATACGGCACGCCCCTAGCTCCTTTCGACCCTTTTAATGACCCTTTTAGAGACACCGAAGAGCCAGATGCGCTTGGAGCCAAGGAGTATGTGCATGTTCGAGTGCAGCAGAGGAATGGAAAGAAGTGCCTGACAATAGTTGAAGGGCTGAAGGAGGACCTGGACTTCAAGAAGAAGCCTAAGGATCTGAAAAGGGAGTTCTGCTGCAATGGCAATGTGGTTGAGGACAAAAAGCTCGGCAAGATAATTCAGCTCCAAGGCGATCAGCGCAACAAGGTGCTTCAGTTTCTTGTTGATGCTAATATTGCCGACAAGGAGCGGATCAAGATTCATGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

134

Amino Acids

15.05

Weight (kDa)

5.42

Isoelectric Point (pI)

19.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 48 - 122 6.3e-23 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028229)

Species Orthologous Gene IDs
malus_domestica MD10G1068300.v1.1
pyrus_communis pycom10g05410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 379
AciI CCGC 1 cut(s) 379
AclWI GGATC 2 cut(s) 252, 389
AcuI CTGAAG 2 cut(s) 230, 326
AgsI TTSAA 2 cut(s) 203, 229
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 4 cut(s) 47, 80, 295, 313
AluI AGCT 4 cut(s) 47, 80, 295, 313
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 2 cut(s) 252, 389
ApeKI GCWGC 2 cut(s) 166, 264
AspLEI GCGC 2 cut(s) 133, 330
AspS9I GGNCC 1 cut(s) 217
AvaII GGWCC 1 cut(s) 217
AxyI CCTNAGG 1 cut(s) 240
BbvI GCAGC 2 cut(s) 178, 251
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 2 cut(s) 44, 77
BisI GCNGC 2 cut(s) 167, 265
BlsI GCNGC 2 cut(s) 168, 266
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 2 cut(s) 118, 346
BsaJI CCNNGG 2 cut(s) 141, 316
Bse21I CCTNAGG 1 cut(s) 240
Bse3DI GCAATG 2 cut(s) 274, 280
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 141, 316
BseMI GCAATG 2 cut(s) 274, 280
BseXI GCAGC 2 cut(s) 178, 251
BsgI GTGCAG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 105
Bsp143I GATC 4 cut(s) 21, 244, 322, 381
BspACI CCGC 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 2 cut(s) 252, 389
BspQI GCTCTTC 1 cut(s) 114
BsrBI CCGCTC 1 cut(s) 379
BsrDI GCAATG 2 cut(s) 274, 280
BssECI CCNNGG 2 cut(s) 141, 316
BssMI GATC 4 cut(s) 21, 244, 322, 381
BssT1I CCWWGG 2 cut(s) 141, 316
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 240
BstHHI GCGC 2 cut(s) 133, 330
BstKTI GATC 4 cut(s) 24, 247, 325, 384
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 4 cut(s) 21, 244, 322, 381
BstMWI GCNNNNNNNGC 5 cut(s) 130, 137, 270, 327, 365
BstNI CCWGG 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 178, 251
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Bsu36I CCTNAGG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 71
CfoI GCGC 2 cut(s) 133, 330
Cfr13I GGNCC 1 cut(s) 217
CviAII CATG 2 cut(s) 155, 392
CviJI RGCY 8 cut(s) 47, 80, 124, 140, 208, 238, 295, 313
CviKI_1 RGCY 8 cut(s) 47, 80, 124, 140, 208, 238, 295, 313
DdeI CTNAG 1 cut(s) 240
DpnI GATC 4 cut(s) 23, 246, 324, 383
DpnII GATC 4 cut(s) 21, 244, 322, 381
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 141, 316
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 2 cut(s) 230, 326
Eco81I CCTNAGG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 219
EcoT14I CCWWGG 2 cut(s) 141, 316
ErhI CCWWGG 2 cut(s) 141, 316
FaeI CATG 2 cut(s) 158, 395
FaiI YATR 5 cut(s) 62, 64, 150, 156, 393
FatI CATG 2 cut(s) 154, 391
Fnu4HI GCNGC 2 cut(s) 167, 265
Fsp4HI GCNGC 2 cut(s) 167, 265
FspBI CTAG 2 cut(s) 44, 77
GlaI GCGC 2 cut(s) 132, 329
GluI GCNGC 2 cut(s) 167, 265
HhaI GCGC 2 cut(s) 133, 330
Hin1II CATG 2 cut(s) 158, 395
Hin6I GCGC 2 cut(s) 131, 328
HinP1I GCGC 2 cut(s) 131, 328
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 1 cut(s) 388
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 21, 249
Hpy188III TCNNGA 2 cut(s) 229, 385
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 197, 205
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 154, 166, 267
HpyF10VI GCNNNNNNNGC 5 cut(s) 130, 137, 270, 327, 365
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 158, 395
HspAI GCGC 2 cut(s) 131, 328
Kzo9I GATC 4 cut(s) 21, 244, 322, 381
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 4 cut(s) 85, 137, 318, 376
LpnPI CCDG 6 cut(s) 24, 39, 138, 203, 206, 233
Lsp1109I GCAGC 2 cut(s) 178, 251
LweI GCATC 2 cut(s) 118, 346
MaeI CTAG 2 cut(s) 44, 77
MaeII ACGT 1 cut(s) 15
MalI GATC 4 cut(s) 23, 246, 324, 383
MbiI CCGCTC 1 cut(s) 379
MboI GATC 4 cut(s) 21, 244, 322, 381
MboII GAAGA 2 cut(s) 131, 244
MflI RGATCY 1 cut(s) 244
MluCI AATT 1 cut(s) 306
MnlI CCTC 4 cut(s) 51, 165, 208, 277
MseI TTAA 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 5 cut(s) 130, 137, 270, 327, 365
NdeII GATC 4 cut(s) 21, 244, 322, 381
NlaIII CATG 2 cut(s) 158, 395
NlaIV GGNNCC 1 cut(s) 139
NmeAIII GCCGAG 1 cut(s) 276
NspI RCATGY 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 388
PkrI GCNGC 2 cut(s) 168, 266
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 217
PspPPI RGGWCCY 1 cut(s) 217
PsuI RGATCY 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 2 cut(s) 167, 265
Sau3AI GATC 4 cut(s) 21, 244, 322, 381
Sau96I GGNCC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 221
SetI ASST 7 cut(s) 18, 49, 82, 222, 297, 315, 339
SfaNI GCATC 2 cut(s) 118, 346
SinI GGWCC 1 cut(s) 217
Sse9I AATT 1 cut(s) 306
SsiI CCGC 1 cut(s) 379
SspI AATATT 1 cut(s) 364
SspMI CTAG 2 cut(s) 44, 77
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 2 cut(s) 141, 316
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 87, 160
TasI AATT 1 cut(s) 306
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseI GCWGC 2 cut(s) 166, 264
TspDTI ATGAA 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 217
XceI RCATGY 1 cut(s) 158
XspI CTAG 2 cut(s) 44, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.