Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0028195

Physical Location & Seq

Genomic Coordinates Reverse (-)

14509523 .. 14510152

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1093700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCAGTTAAAGCCCTTCAACTCCTTCAGCATCGCCTTCATGATGAGCGGCGCACTCTTGCTTGTTTTCTTCTACAGCTTCCTCGAATTCCCTTTTCTATCAACCTCAATCAAACCCATCAACGATCCGACCAAGTTCACACCCGACCCCTTTACCAACTTGATCGGCGCCTTCAGGAAGTGGGATGCCCAAGTGGGTTGCTCTCGTTTCAGAGAGAAGCACAAGTTGCAGATGTTGCAGAACAAGTCTTCTTCTCTGCAACAAATTCGCGGCGAATCGGAGTGTGGGGAGGCAAAATCGGAGCATGTTAGCGTGCTGGTGAAAGGGTGGACTTGGATTCTTGATAATTTGGATAGTTTGTATTCATGCTCGTGTGGGTTGAGCTGTTTGTGGACTAAATCTCATGTTCTTGCTGACAAGCCTGATGCTTTGCTGTTTGAGACTACTACACCTCCCCTTCAGAGACACAGTGGAGATCCACTTCGCGTGTACATGGATCTTGAGGCTGGCAGGAAGCGATCTGGTGTTGAATATATATTTGTAAGTTATCACGCCAAAGATGATGTGCAGTCCACCTATGCCGGTGCACTCTTTCACAATGGTCGAAATTATCATGTATCCCTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009987 GO:0010493 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046920 GO:0070085 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_10

Protein Analysis

210

Amino Acids

23.71

Weight (kDa)

8.24

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028195)

Species	Orthologous Gene IDs
malus_domestica	MD10G1093700.v1.1
pyrus_communis	pycom15g36610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	48
AccII	CGCG	2 cut(s)	270, 486
AciI	CCGC	2 cut(s)	48, 270
AclWI	GGATC	3 cut(s)	119, 470, 504
AcsI	RAATTY	2 cut(s)	86, 264
AcuI	CTGAAG	3 cut(s)	10, 157, 443
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	19, 530
AluBI	AGCT	2 cut(s)	78, 384
AluI	AGCT	2 cut(s)	78, 384
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	2 cut(s)	434, 457
Alw44I	GTGCAC	1 cut(s)	585
AlwI	GGATC	3 cut(s)	119, 470, 504
ApaLI	GTGCAC	1 cut(s)	585
ApoI	RAATTY	2 cut(s)	86, 264
AspLEI	GCGC	2 cut(s)	53, 170
AsuHPI	GGTGA	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	589
BccI	CCATC	1 cut(s)	125
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciVI	GTATCC	1 cut(s)	628
BcoDI	GTCTC	2 cut(s)	434, 457
BfmI	CTRYAG	1 cut(s)	73
BfoI	RGCGCY	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	628
BisI	GCNGC	2 cut(s)	49, 271
BlsI	GCNGC	2 cut(s)	50, 272
BmiI	GGNNCC	1 cut(s)	169
BmsI	GCATC	3 cut(s)	39, 175, 415
BpiI	GAAGAC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	521
BsaHI	GRCGYC	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bse118I	RCCGGY	1 cut(s)	581
BseGI	GGATG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	589
BsgI	GTGCAG	1 cut(s)	587
Bsh1236I	CGCG	2 cut(s)	270, 486
BshNI	GGYRCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	589
BsiSI	CCGG	1 cut(s)	582
BsmAI	GTCTC	2 cut(s)	434, 457
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	5 cut(s)	124, 162, 475, 496, 518
BspACI	CCGC	2 cut(s)	48, 270
BspFNI	CGCG	2 cut(s)	270, 486
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	3 cut(s)	119, 470, 504
BspT107I	GGYRCC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	581
BsrGI	TGTACA	1 cut(s)	489
BssAI	RCCGGY	1 cut(s)	581
BssMI	GATC	5 cut(s)	124, 162, 475, 496, 518
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	470
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	2 cut(s)	226, 235
BstAUI	TGTACA	1 cut(s)	489
BstC8I	GCNNGC	2 cut(s)	314, 508
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	2 cut(s)	270, 486
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	53, 170
BstKTI	GATC	5 cut(s)	127, 165, 478, 499, 521
BstMAI	GTCTC	2 cut(s)	434, 457
BstMBI	GATC	5 cut(s)	124, 162, 475, 496, 518
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 226, 235
BstNSI	RCATGY	1 cut(s)	308
BstSFI	CTRYAG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	589
BstUI	CGCG	2 cut(s)	270, 486
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	475, 496
BstYI	RGATCY	2 cut(s)	475, 496
BsuI	GTATCC	1 cut(s)	628
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	314, 508
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	2 cut(s)	53, 170
Cfr10I	RCCGGY	1 cut(s)	581
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	6 cut(s)	40, 305, 366, 404, 493, 614
CviJI	RGCY	5 cut(s)	13, 78, 384, 421, 506
CviKI_1	RGCY	5 cut(s)	13, 78, 384, 421, 506
CviQI	GTAC	1 cut(s)	490
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	5 cut(s)	126, 164, 477, 498, 520
DpnII	GATC	5 cut(s)	124, 162, 475, 496, 518
Eco57I	CTGAAG	3 cut(s)	10, 157, 443
EcoRI	GAATTC	1 cut(s)	86
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaeI	CATG	6 cut(s)	43, 308, 369, 407, 496, 617
FaiI	YATR	9 cut(s)	41, 306, 367, 405, 494, 534, 536, 579, 615
FatI	CATG	6 cut(s)	39, 304, 365, 403, 492, 613
Fnu4HI	GCNGC	2 cut(s)	49, 271
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	49, 271
GlaI	GCGC	2 cut(s)	52, 169
GluI	GCNGC	2 cut(s)	49, 271
HaeII	RGCGCY	1 cut(s)	171
HapII	CCGG	1 cut(s)	582
HhaI	GCGC	2 cut(s)	53, 170
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	43, 308, 369, 407, 496, 617
Hin6I	GCGC	2 cut(s)	51, 168
HinP1I	GCGC	2 cut(s)	51, 168
HinfI	GANTC	2 cut(s)	275, 337
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	6 cut(s)	138, 330, 393, 490, 573, 587
Hpy188I	TCNGA	5 cut(s)	129, 212, 280, 301, 462
Hpy188III	TCNNGA	4 cut(s)	40, 175, 341, 500
Hpy8I	GTNNAC	6 cut(s)	138, 330, 393, 490, 573, 587
HpyAV	CCTTC	5 cut(s)	25, 34, 46, 181, 467
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4V	TGCA	6 cut(s)	4, 229, 238, 259, 568, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 226, 235
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	6 cut(s)	43, 308, 369, 407, 496, 617
HspAI	GCGC	2 cut(s)	51, 168
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	5 cut(s)	124, 162, 475, 496, 518
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	7 cut(s)	160, 302, 435, 492, 496, 507, 595
LweI	GCATC	3 cut(s)	39, 175, 415
MalI	GATC	5 cut(s)	126, 164, 477, 498, 520
MbiI	CCGCTC	1 cut(s)	48
MboI	GATC	5 cut(s)	124, 162, 475, 496, 518
MboII	GAAGA	3 cut(s)	61, 240, 243
MflI	RGATCY	2 cut(s)	475, 496
MhlI	GDGCHC	1 cut(s)	589
MluCI	AATT	4 cut(s)	86, 264, 346, 607
Mly113I	GGCGCC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	5 cut(s)	92, 115, 283, 462, 496
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	370
MspI	CCGG	1 cut(s)	582
MvnI	CGCG	2 cut(s)	270, 486
MwoI	GCNNNNNNNGC	3 cut(s)	10, 226, 235
NarI	GGCGCC	1 cut(s)	168
NdeII	GATC	5 cut(s)	124, 162, 475, 496, 518
NlaIII	CATG	6 cut(s)	43, 308, 369, 407, 496, 617
NlaIV	GGNNCC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	308
PagI	TCATGA	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	275, 337
PkrI	GCNGC	2 cut(s)	50, 272
PluTI	GGCGCC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	169
PsuI	RGATCY	2 cut(s)	475, 496
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	2 cut(s)	49, 271
Sau3AI	GATC	5 cut(s)	124, 162, 475, 496, 518
SduI	GDGCHC	1 cut(s)	589
SetI	ASST	5 cut(s)	80, 107, 386, 454, 578
SfaNI	GCATC	3 cut(s)	39, 175, 415
SfcI	CTRYAG	1 cut(s)	73
SfoI	GGCGCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	4 cut(s)	86, 264, 346, 607
SsiI	CCGC	2 cut(s)	48, 270
SspDI	GGCGCC	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	470
TaqI	TCGA	2 cut(s)	84, 604
TasI	AATT	4 cut(s)	86, 264, 346, 607
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	2 cut(s)	51, 273
TfiI	GAWTC	2 cut(s)	275, 337
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	1 cut(s)	475
TspDTI	ATGAA	2 cut(s)	28, 354
TspRI	CASTG	1 cut(s)	475
VneI	GTGCAC	1 cut(s)	585
XapI	RAATTY	2 cut(s)	86, 264
XceI	RCATGY	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.