Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013434

Physical Location & Seq

Genomic Coordinates Reverse (-)

17844252 .. 17846553

Gene Structure 2302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1108400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAAGAAGCAGAGGCAGATGCACAAGTGAGAAGAGCTGCTGGTGGAAATGGGGAAGGTGAGGCAACAGAGAAGCAAGGTCTGGAGGAGAATCGTGATGGTTTGAAGGTTCTGCCTTTTGAGTTTGTTGCATTGGAGGCATGCCTTGAGGCTGCTTGCAGTGTCTTAGAGAGTGAAGCAAAAACATTGGAGCAAGAAGCTCATCCAGCTTTAGATAAGCTCACTTCAAAGATTAGTACTCTCAATTTGGAACACGTCCGCCAAATCAAGAGTCGCTTGGTTGCAATTACCGGCCGTGTTCAGAAGGTGAGGGATGAACTAGAACACTTGCTTGATGATGATGAAGATATGGCTGAAATGTATCTAACTGACAAGTTGGTTCAGCAACATCTTGAAAATTCGTCCACTTCGTCCTTGGGTGAGAGAGATGACATGGATCCTGAAGCTCCAGGATCAGATATGGATGACAGGGGTCCTACTGAAATCTCAATGGAAGCTGGTGGGGACCACTTGAATTTTGAAGGTGATCCTCAAAACACTGATGACCCCCGGCATCAATTTCTTAGAAGGGACAGCCATGGGACCGCTACTAGCTCCACGCATAGTGCTATAGGAAAGGAACTCGATGTAGAAGAGCTTGAAATGCTTTTGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAGCTATCCACGCTGAGGGAGTACGTCGACGACACAGAGGATTACATCAACATAATGTTGGATGACAAACAGAACAATCTCCTCCAAATGGGGGTCATGTTGACAACAGCAACCCTGGCTGTGAGTGGCCTTGTTGTTGTAGCTGGTGTCATGGGCATGAACATCCATATTGACCTATTTGATAAAGAAAAAGCAGGGATGCCACAATTCCTGTGGACAGTTGGTGGCAGTACTGCCGGGACCATATTCTTATATGCGACTGCTATCGGATGCTGCAAGCATAAGCGCTTGCTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

329

Amino Acids

36.14

Weight (kDa)

4.48

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	36 - 129	3.4e-17	Magnesium transporter MRS2-like
MRS2-like	PF22099	207 - 251	9.7e-08	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19640
fragaria_vesca	FvH4_2g03580
malus_domestica	MD05G1102700.v1.1 MD10G1108400.v1.1
prunus_persica	Prupe.8G147300_v2.0.a1 Prupe.8G147300_v2.0.a1
pyrus_communis	pycom05g10050 pycom10g09360
rosa_chinensis	RchiOBHm_Chr6g0252531
rosa_laevigata	RLG00000015091
rosa_multiflora	Rmu_sc0002016.1_g000024
rosa_roxburghii	Rroxscaffold_7G00212640
rosa_rugosa	Rorug05G0536600
rosa_samantha	Rh6AG052900 Rh6BG046700 Rh6CG045400 Rh6DG041200
rosa_wichuraiana	Rw6G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	714
AciI	CCGC	2 cut(s)	259, 585
AclWI	GGATC	4 cut(s)	431, 444, 460, 521
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	397, 514
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	4 cut(s)	238, 679, 710, 919
AfeI	AGCGCT	1 cut(s)	974
AfiI	CCNNNNNNNGG	3 cut(s)	702, 775, 778
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	6 cut(s)	106, 228, 395, 514, 521, 641
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	448, 801
AloI	GAACNNNNNNTCC	2 cut(s)	677, 709
AlwI	GGATC	4 cut(s)	431, 444, 460, 521
Aor51HI	AGCGCT	1 cut(s)	974
AoxI	GGCC	2 cut(s)	292, 814
ApeKI	GCWGC	3 cut(s)	38, 152, 960
ApoI	RAATTY	2 cut(s)	397, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	256, 288
AspLEI	GCGC	1 cut(s)	975
AspS9I	GGNCC	4 cut(s)	473, 505, 582, 927
AsuC2I	CCSGG	2 cut(s)	550, 925
AsuHPI	GGTGA	4 cut(s)	71, 319, 431, 536
AvaII	GGWCC	4 cut(s)	473, 505, 582, 927
BamHI	GGATCC	1 cut(s)	436
BbvCI	CCTCAGC	1 cut(s)	701
BbvI	GCAGC	3 cut(s)	25, 139, 947
BccI	CCATC	2 cut(s)	92, 668
BceAI	ACGGC	1 cut(s)	279
BciT130I	CCWGG	2 cut(s)	450, 803
BcnI	CCSGG	2 cut(s)	550, 925
BfaI	CTAG	2 cut(s)	320, 591
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	976
BisI	GCNGC	3 cut(s)	39, 153, 961
BlsI	GCNGC	3 cut(s)	40, 154, 962
BmcAI	AGTACT	2 cut(s)	238, 919
Bme1390I	CCNGG	4 cut(s)	450, 550, 803, 925
Bme18I	GGWCC	4 cut(s)	473, 505, 582, 927
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	4 cut(s)	473, 505, 582, 927
BmiI	GGNNCC	5 cut(s)	438, 474, 506, 583, 928
BmrFI	CCNGG	4 cut(s)	450, 550, 803, 925
BmsI	GCATC	4 cut(s)	10, 562, 876, 947
BoxI	GACNNNNGTC	1 cut(s)	471
BpmI	CTGGAG	2 cut(s)	104, 432
Bpu10I	CCTNAGC	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	2 cut(s)	550, 925
BsaJI	CCNNGG	4 cut(s)	414, 548, 577, 801
Bsc4I	CCNNNNNNNGG	3 cut(s)	702, 775, 778
Bse118I	RCCGGY	1 cut(s)	290
BseBI	CCWGG	2 cut(s)	450, 803
BseDI	CCNNGG	4 cut(s)	414, 548, 577, 801
BseGI	GGATG	7 cut(s)	202, 319, 469, 754, 849, 891, 962
BseLI	CCNNNNNNNGG	3 cut(s)	702, 775, 778
BseMII	CTCAG	1 cut(s)	692
BseRI	GAGGAG	2 cut(s)	101, 758
BseX3I	CGGCCG	1 cut(s)	292
BseXI	GCAGC	3 cut(s)	25, 139, 947
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	294, 816
BsiEI	CGRYCG	1 cut(s)	295
BsiSI	CCGG	3 cut(s)	291, 550, 924
BslFI	GGGAC	4 cut(s)	518, 584, 595, 940
BslI	CCNNNNNNNGG	3 cut(s)	702, 775, 778
BsmFI	GGGAC	4 cut(s)	518, 584, 595, 940
BsnI	GGCC	2 cut(s)	294, 816
Bsp143I	GATC	3 cut(s)	436, 452, 526
Bsp19I	CCATGG	1 cut(s)	577
BspACI	CCGC	2 cut(s)	259, 585
BspANI	GGCC	2 cut(s)	294, 816
BspCNI	CTCAG	1 cut(s)	693
BspLI	GGNNCC	5 cut(s)	438, 474, 506, 583, 928
BspPI	GGATC	4 cut(s)	431, 444, 460, 521
BspQI	GCTCTTC	2 cut(s)	28, 627
BsrFI	RCCGGY	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	4 cut(s)	414, 548, 577, 801
BssMI	GATC	3 cut(s)	436, 452, 526
BssT1I	CCWWGG	2 cut(s)	414, 577
Bst2UI	CCWGG	2 cut(s)	450, 803
Bst4CI	ACNGT	1 cut(s)	907
Bst6I	CTCTTC	2 cut(s)	28, 627
BstC8I	GCNNGC	4 cut(s)	142, 157, 965, 977
BstDEI	CTNAG	3 cut(s)	166, 563, 701
BstDSI	CCRYGG	1 cut(s)	577
BstF5I	GGATG	7 cut(s)	202, 319, 469, 754, 849, 891, 962
BstH2I	RGCGCY	1 cut(s)	976
BstHHI	GCGC	1 cut(s)	975
BstKTI	GATC	3 cut(s)	439, 455, 529
BstMBI	GATC	3 cut(s)	436, 452, 526
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 206, 643, 697, 803
BstNI	CCWGG	2 cut(s)	450, 803
BstNSI	RCATGY	1 cut(s)	144
BstPAI	GACNNNNGTC	1 cut(s)	471
BstSCI	CCNGG	4 cut(s)	448, 548, 801, 923
BstSFI	CTRYAG	1 cut(s)	609
BstV1I	GCAGC	3 cut(s)	25, 139, 947
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BstZI	CGGCCG	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	294, 816
BtgI	CCRYGG	1 cut(s)	577
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	7 cut(s)	202, 319, 469, 754, 849, 891, 962
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	3 cut(s)	166, 537, 680
Cac8I	GCNNGC	4 cut(s)	142, 157, 965, 977
CfoI	GCGC	1 cut(s)	975
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	4 cut(s)	473, 505, 582, 927
Csp6I	GTAC	4 cut(s)	237, 678, 709, 918
CspCI	CAANNNNNGTGG	2 cut(s)	881, 916
CviAII	CATG	6 cut(s)	141, 433, 578, 784, 838, 844
CviQI	GTAC	4 cut(s)	237, 678, 709, 918
DdeI	CTNAG	3 cut(s)	166, 563, 701
DpnI	GATC	3 cut(s)	438, 454, 528
DpnII	GATC	3 cut(s)	436, 452, 526
EaeI	YGGCCR	1 cut(s)	292
EagI	CGGCCG	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	28, 627
EarI	CTCTTC	2 cut(s)	28, 627
EciI	GGCGGA	1 cut(s)	248
EclXI	CGGCCG	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	414, 577
Eco47I	GGWCC	4 cut(s)	473, 505, 582, 927
Eco47III	AGCGCT	1 cut(s)	974
Eco52I	CGGCCG	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	473
EcoRII	CCWGG	2 cut(s)	448, 801
EcoT14I	CCWWGG	2 cut(s)	414, 577
ErhI	CCWWGG	2 cut(s)	414, 577
FaeI	CATG	6 cut(s)	144, 436, 581, 787, 841, 847
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	4 cut(s)	518, 584, 595, 940
FatI	CATG	6 cut(s)	140, 432, 577, 783, 837, 843
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	3 cut(s)	39, 153, 961
FokI	GGATG	7 cut(s)	189, 326, 476, 761, 836, 898, 969
Fsp4HI	GCNGC	3 cut(s)	39, 153, 961
FspBI	CTAG	2 cut(s)	320, 591
GlaI	GCGC	1 cut(s)	974
GluI	GCNGC	3 cut(s)	39, 153, 961
GsuI	CTGGAG	2 cut(s)	104, 432
HaeII	RGCGCY	1 cut(s)	976
HaeIII	GGCC	2 cut(s)	294, 816
HapII	CCGG	3 cut(s)	291, 550, 924
HhaI	GCGC	1 cut(s)	975
Hin1II	CATG	6 cut(s)	144, 436, 581, 787, 841, 847
Hin6I	GCGC	1 cut(s)	973
HinP1I	GCGC	1 cut(s)	973
HincII	GTYRAC	2 cut(s)	715, 789
HindII	GTYRAC	2 cut(s)	715, 789
HinfI	GANTC	2 cut(s)	91, 271
HpaII	CCGG	3 cut(s)	291, 550, 924
HphI	GGTGA	4 cut(s)	71, 319, 431, 536
Hpy166II	GTNNAC	5 cut(s)	405, 680, 715, 789, 903
Hpy188I	TCNGA	3 cut(s)	303, 457, 956
Hpy188III	TCNNGA	5 cut(s)	83, 95, 268, 392, 440
Hpy8I	GTNNAC	5 cut(s)	405, 680, 715, 789, 903
Hpy99I	CGWCG	2 cut(s)	716, 719
HpyAV	CCTTC	5 cut(s)	50, 100, 298, 515, 561
HpyCH4III	ACNGT	1 cut(s)	907
HpyCH4IV	ACGT	2 cut(s)	255, 711
HpyCH4V	TGCA	6 cut(s)	23, 131, 159, 284, 667, 963
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 206, 643, 697, 803
HpyF3I	CTNAG	3 cut(s)	166, 563, 701
HpySE526I	ACGT	2 cut(s)	255, 711
Hsp92II	CATG	6 cut(s)	144, 436, 581, 787, 841, 847
HspAI	GCGC	1 cut(s)	973
Kzo9I	GATC	3 cut(s)	436, 452, 526
LguI	GCTCTTC	2 cut(s)	28, 627
LmnI	GCTCC	3 cut(s)	190, 451, 599
Lsp1109I	GCAGC	3 cut(s)	25, 139, 947
LweI	GCATC	4 cut(s)	10, 562, 876, 947
MaeI	CTAG	2 cut(s)	320, 591
MaeII	ACGT	2 cut(s)	255, 711
MalI	GATC	3 cut(s)	438, 454, 528
MboI	GATC	3 cut(s)	436, 452, 526
MboII	GAAGA	4 cut(s)	17, 45, 356, 644
MflI	RGATCY	1 cut(s)	436
MluCI	AATT	7 cut(s)	244, 285, 397, 514, 557, 669, 893
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	726
MslI	CAYNNNNRTG	1 cut(s)	842
MspI	CCGG	3 cut(s)	291, 550, 924
MspR9I	CCNGG	4 cut(s)	450, 550, 803, 925
MvaI	CCWGG	2 cut(s)	450, 803
MwoI	GCNNNNNNNGC	5 cut(s)	137, 206, 643, 697, 803
NciI	CCSGG	2 cut(s)	550, 925
NcoI	CCATGG	1 cut(s)	577
NdeII	GATC	3 cut(s)	436, 452, 526
NlaIII	CATG	6 cut(s)	144, 436, 581, 787, 841, 847
NlaIV	GGNNCC	5 cut(s)	438, 474, 506, 583, 928
NspI	RCATGY	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	144
PciSI	GCTCTTC	2 cut(s)	28, 627
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	40, 154, 962
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
PpuMI	RGGWCCY	1 cut(s)	473
PshAI	GACNNNNGTC	1 cut(s)	471
Psp5II	RGGWCCY	1 cut(s)	473
Psp6I	CCWGG	2 cut(s)	448, 801
PspGI	CCWGG	2 cut(s)	448, 801
PspN4I	GGNNCC	5 cut(s)	438, 474, 506, 583, 928
PspPI	GGNCC	4 cut(s)	473, 505, 582, 927
PspPPI	RGGWCCY	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	4 cut(s)	238, 679, 710, 919
RsaNI	GTAC	4 cut(s)	237, 678, 709, 918
RseI	CAYNNNNRTG	1 cut(s)	842
SalI	GTCGAC	1 cut(s)	713
SapI	GCTCTTC	2 cut(s)	28, 627
SatI	GCNGC	3 cut(s)	39, 153, 961
Sau3AI	GATC	3 cut(s)	436, 452, 526
Sau96I	GGNCC	4 cut(s)	473, 505, 582, 927
ScaI	AGTACT	2 cut(s)	238, 919
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	4 cut(s)	450, 550, 803, 925
SfaNI	GCATC	4 cut(s)	10, 562, 876, 947
SfcI	CTRYAG	1 cut(s)	609
SgrDI	CGTCGACG	1 cut(s)	713
SinI	GGWCC	4 cut(s)	473, 505, 582, 927
SmiMI	CAYNNNNRTG	1 cut(s)	842
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	7 cut(s)	244, 285, 397, 514, 557, 669, 893
SsiI	CCGC	2 cut(s)	259, 585
SspMI	CTAG	2 cut(s)	320, 591
StyD4I	CCNGG	4 cut(s)	448, 548, 801, 923
StyI	CCWWGG	2 cut(s)	414, 577
TaaI	ACNGT	1 cut(s)	907
TaiI	ACGT	2 cut(s)	258, 714
TaqI	TCGA	2 cut(s)	624, 714
TasI	AATT	7 cut(s)	244, 285, 397, 514, 557, 669, 893
TatI	WGTACW	2 cut(s)	236, 917
TfiI	GAWTC	1 cut(s)	91
TscAI	CASTG	3 cut(s)	166, 544, 687
TseI	GCWGC	3 cut(s)	38, 152, 960
TspDTI	ATGAA	3 cut(s)	330, 357, 860
TspRI	CASTG	3 cut(s)	166, 544, 687
VpaK11BI	GGWCC	4 cut(s)	473, 505, 582, 927
XapI	RAATTY	2 cut(s)	397, 514
XceI	RCATGY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	2 cut(s)	412, 897
XmiI	GTMKAC	1 cut(s)	714
XspI	CTAG	2 cut(s)	320, 591
ZrmI	AGTACT	2 cut(s)	238, 919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.