MD10G1119600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0028201
Physical Location & Seq
Forward (+)
19668863 .. 19670474
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1119600.v1.1.491

Sequence Viewer

Length: 1302 bp
ATGGGGGTTGACACTGTAGTAAAGCTCTTACTTATGTTGCTTCTCTCAGCAGTGGAGTTTGGTTGTCATAAGTTGCATTTGGTTGGGGCAAGAGATATAATTTCTGTCGAAGACATGGCTAAAATATCTAATGTGAGTCTTGGTCTACTACCAGTTCTCTGTAACTGTATTGCTACTGCTGAGCACGGAACCCTCTCCCTAACTACTATGGACTTGATACTTCGAAATTTCTTGACTCCCAACACTTGGTTCCCCATTATACAGAACCACCTCCAGCTTCAGCGTGTGATTCTGAAGCTTCAAAATAAAAATTCTCTTGAGTCTGTGCCTGTTATAATGAATTTCTTTTTTACTCTTGCCCGTTTTAGGCGGGGTGCAGAAATGCTTATTAATTATGGCTTTCTCTCGTCTCTGAGATTCTTGTTCGCTGAATACTTGGATGGTACGTCTTCTTCCGAAACTATTGATAACAGAAATTCCAACTCATCATCTAAGAAACTGGAAAAGCCTCCGCAAATATGGGGACTTGGTTTGGCAGTCATCACAGCTATGGTTGAGTCATTAGGAGACAGTGCTGCTTGTTCCAATCTTGTGGAGAAAGTACTACCTTACTTCTTTTCAGAGAAAGACTATATGATTTCTTACTATCTAAGTGCTCCGGATTTCCCATCTGATGATCATGACAAGAAAAGACCTCGGGCTCAGCAGAGACAAACTTCTCTTACTGATCTTAAAGAAACTGAGCACACTCTCATGCTAATGTGTGTGCTAGCAAAACATTGGAATTCCTGGGTTAAGTCTATGAAAGAATTGGATTCCCAGTTGAGAGAGAAAAGTATCCATCTTTTAGCCTTTATCAGTAGGGGAACTCAAAGGCTTGGAGAACCTTCTAGTCTTAGTGCCCCTCTGTTATGTCCTTCTGTCCTTAAAGAGGAATTTGATGGCTGCAAGAAACCCTCATTTATCAACAGTAAAAGTGGATGGTTTGCCCTTTCTGCCCTCAGTTGTGTTTCAAAACCAAAATTCTCCACCATCCCTACCACATCTACTGCGCTGGTTATTAAAACTCAAGCAACTGTAAATGGCAGTCACATTTCTCAGTCATATTTCTCTGACTCTATTGCCCTACAGATCTACAGAATAACTTTTCTCCTTTTGAAGTTCCTGAGCTTACAATGCCTGAGATCTTACATGGCTTACAGGACCAAGCAATTACAATTGTTACAGAGCTGTGTGAGGTTAACAGATCAAACGAGATTCAAATTGAAGTCCAGAGTATCTGTTGCTTACTGCTACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
No domains found.

Protein Analysis

434

Amino Acids

48.81

Weight (kDa)

9.24

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028201)

Species Orthologous Gene IDs
malus_domestica MD10G1119600.v1.1
pyrus_communis pycom10g10300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 246
AccI GTMKAC 1 cut(s) 145
AccIII TCCGGA 1 cut(s) 658
AciI CCGC 2 cut(s) 370, 512
AcsI RAATTY 7 cut(s) 226, 310, 340, 475, 784, 935, 1022
AcuI CTGAAG 2 cut(s) 263, 314
AfaI GTAC 2 cut(s) 445, 603
AfiI CCNNNNNNNGG 3 cut(s) 246, 366, 931
AgsI TTSAA 5 cut(s) 302, 1014, 1159, 1261, 1267
AjnI CCWGG 1 cut(s) 788
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 6 cut(s) 25, 277, 298, 548, 1170, 1230
AluI AGCT 6 cut(s) 25, 277, 298, 548, 1170, 1230
Alw21I GWGCWC 3 cut(s) 186, 658, 747
Alw26I GTCTC 3 cut(s) 414, 561, 703
Ama87I CYCGRG 1 cut(s) 696
Aor13HI TCCGGA 1 cut(s) 658
ApeKI GCWGC 2 cut(s) 575, 945
ApoI RAATTY 7 cut(s) 226, 310, 340, 475, 784, 935, 1022
AseI ATTAAT 1 cut(s) 390
AspLEI GCGC 1 cut(s) 1054
AspS9I GGNCC 1 cut(s) 1203
AsuII TTCGAA 1 cut(s) 223
AsuNHI GCTAGC 1 cut(s) 769
AvaI CYCGRG 1 cut(s) 696
AvaII GGWCC 1 cut(s) 1203
BaeGI GKGCMC 1 cut(s) 904
BanII GRGCYC 1 cut(s) 703
BarI GAAGNNNNNNTAC 2 cut(s) 436, 468
BbsI GAAGAC 2 cut(s) 117, 441
Bbv12I GWGCWC 3 cut(s) 186, 658, 747
BbvI GCAGC 2 cut(s) 562, 932
BccI CCATC 6 cut(s) 434, 676, 849, 935, 975, 1040
BciT130I CCWGG 1 cut(s) 790
BciVI GTATCC 1 cut(s) 848
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 3 cut(s) 414, 561, 703
BfaI CTAG 2 cut(s) 770, 891
BfmI CTRYAG 3 cut(s) 15, 1127, 1135
BfuI GTATCC 1 cut(s) 848
BglII AGATCT 2 cut(s) 1131, 1184
BisI GCNGC 2 cut(s) 576, 946
BlpI GCTNAGC 2 cut(s) 180, 702
BlsI GCNGC 2 cut(s) 577, 947
BmcAI AGTACT 1 cut(s) 603
Bme1390I CCNGG 1 cut(s) 790
Bme18I GGWCC 1 cut(s) 1203
BmeT110I CYCGRG 1 cut(s) 696
BmgT120I GGNCC 1 cut(s) 1203
BmiI GGNNCC 2 cut(s) 190, 251
BmrFI CCNGG 1 cut(s) 790
BmrI ACTGGG 1 cut(s) 814
BmtI GCTAGC 1 cut(s) 773
BmuI ACTGGG 1 cut(s) 814
BpiI GAAGAC 2 cut(s) 117, 441
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 1166
Bpu1102I GCTNAGC 2 cut(s) 180, 702
Bpu14I TTCGAA 1 cut(s) 223
BpuEI CTTGAG 2 cut(s) 338, 1053
BsaJI CCNNGG 2 cut(s) 695, 789
BsaWI WCCGGW 1 cut(s) 658
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 366, 931
Bse1I ACTGG 3 cut(s) 152, 504, 820
BseAI TCCGGA 1 cut(s) 658
BseBI CCWGG 1 cut(s) 790
BseDI CCNNGG 2 cut(s) 695, 789
BseGI GGATG 3 cut(s) 445, 986, 1032
BseLI CCNNNNNNNGG 3 cut(s) 246, 366, 931
BseMII CTCAG 9 cut(s) 60, 171, 404, 716, 732, 1015, 1112, 1157, 1172
BseNI ACTGG 3 cut(s) 152, 504, 820
BseSI GKGCMC 1 cut(s) 904
BseXI GCAGC 2 cut(s) 562, 932
BsgI GTGCAG 1 cut(s) 396
BsiHKAI GWGCWC 3 cut(s) 186, 658, 747
BsiHKCI CYCGRG 1 cut(s) 696
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 3 cut(s) 246, 366, 931
BsmAI GTCTC 3 cut(s) 414, 561, 703
BsmBI CGTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 537
BsoBI CYCGRG 1 cut(s) 696
Bsp119I TTCGAA 1 cut(s) 223
Bsp1286I GDGCHC 5 cut(s) 186, 658, 703, 747, 904
Bsp13I TCCGGA 1 cut(s) 658
Bsp143I GATC 5 cut(s) 676, 727, 1131, 1184, 1246
Bsp1720I GCTNAGC 2 cut(s) 180, 702
BspACI CCGC 2 cut(s) 370, 512
BspCNI CTCAG 9 cut(s) 59, 172, 405, 715, 733, 1014, 1111, 1158, 1173
BspEI TCCGGA 1 cut(s) 658
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 2 cut(s) 190, 251
BspOI GCTAGC 1 cut(s) 773
BspT104I TTCGAA 1 cut(s) 223
BsrI ACTGG 3 cut(s) 152, 504, 820
BssECI CCNNGG 2 cut(s) 695, 789
BssMI GATC 5 cut(s) 676, 727, 1131, 1184, 1246
Bst2UI CCWGG 1 cut(s) 790
Bst4CI ACNGT 5 cut(s) 16, 167, 572, 971, 1078
BstBI TTCGAA 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 771
BstENI CCTNNNNNAGG 1 cut(s) 929
BstF5I GGATG 3 cut(s) 445, 986, 1032
BstHHI GCGC 1 cut(s) 1054
BstKTI GATC 5 cut(s) 679, 730, 1134, 1187, 1249
BstMAI GTCTC 3 cut(s) 414, 561, 703
BstMBI GATC 5 cut(s) 676, 727, 1131, 1184, 1246
BstMWI GCNNNNNNNGC 2 cut(s) 995, 1176
BstNI CCWGG 1 cut(s) 790
BstSCI CCNGG 1 cut(s) 788
BstSFI CTRYAG 3 cut(s) 15, 1127, 1135
BstSLI GKGCMC 1 cut(s) 904
BstV1I GCAGC 2 cut(s) 562, 932
BstV2I GAAGAC 2 cut(s) 117, 441
BstX2I RGATCY 2 cut(s) 1131, 1184
BstXI CCANNNNNNTGG 1 cut(s) 592
BstYI RGATCY 2 cut(s) 1131, 1184
BsuI GTATCC 1 cut(s) 848
BtsCI GGATG 3 cut(s) 445, 986, 1032
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 3 cut(s) 12, 57, 577
Cac8I GCNNGC 1 cut(s) 771
CciI TCATGA 1 cut(s) 679
CfoI GCGC 1 cut(s) 1054
Cfr13I GGNCC 1 cut(s) 1203
Csp6I GTAC 2 cut(s) 444, 602
CviAII CATG 4 cut(s) 115, 680, 754, 1192
CviQI GTAC 2 cut(s) 444, 602
DpnI GATC 5 cut(s) 678, 729, 1133, 1186, 1248
DpnII GATC 5 cut(s) 676, 727, 1131, 1184, 1246
Eco24I GRGCYC 1 cut(s) 703
Eco47I GGWCC 1 cut(s) 1203
Eco57I CTGAAG 2 cut(s) 263, 314
Eco88I CYCGRG 1 cut(s) 696
EcoNI CCTNNNNNAGG 1 cut(s) 929
EcoRI GAATTC 1 cut(s) 784
EcoRII CCWGG 1 cut(s) 788
EcoT38I GRGCYC 1 cut(s) 703
Esp3I CGTCTC 1 cut(s) 414
FaeI CATG 4 cut(s) 118, 683, 757, 1195
FaqI GGGAC 1 cut(s) 537
FatI CATG 4 cut(s) 114, 679, 753, 1191
FauI CCCGC 1 cut(s) 363
FbaI TGATCA 1 cut(s) 676
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 576, 946
FokI GGATG 3 cut(s) 452, 993, 1019
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 2 cut(s) 576, 946
FspBI CTAG 2 cut(s) 770, 891
GlaI GCGC 1 cut(s) 1053
GluI GCNGC 2 cut(s) 576, 946
GsuI CTGGAG 1 cut(s) 257
HapII CCGG 1 cut(s) 659
HhaI GCGC 1 cut(s) 1054
Hin1II CATG 4 cut(s) 118, 683, 757, 1195
Hin6I GCGC 1 cut(s) 1052
HinP1I GCGC 1 cut(s) 1052
HincII GTYRAC 2 cut(s) 10, 1242
HindII GTYRAC 2 cut(s) 10, 1242
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 9 cut(s) 136, 235, 289, 320, 417, 557, 815, 1115, 1257
HpaI GTTAAC 1 cut(s) 1242
HpaII CCGG 1 cut(s) 659
Hpy166II GTNNAC 3 cut(s) 10, 146, 1242
Hpy188I TCNGA 6 cut(s) 294, 414, 457, 622, 673, 1114
Hpy188III TCNNGA 6 cut(s) 232, 317, 659, 680, 1165, 1272
Hpy8I GTNNAC 3 cut(s) 10, 146, 1242
HpyAV CCTTC 2 cut(s) 897, 927
HpyCH4III ACNGT 5 cut(s) 16, 167, 572, 971, 1078
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 3 cut(s) 76, 377, 948
HpyF10VI GCNNNNNNNGC 2 cut(s) 995, 1176
HpySE526I ACGT 1 cut(s) 446
Hsp92II CATG 4 cut(s) 118, 683, 757, 1195
HspAI GCGC 1 cut(s) 1052
Kpn2I TCCGGA 1 cut(s) 658
Ksp22I TGATCA 1 cut(s) 676
KspAI GTTAAC 1 cut(s) 1242
Kzo9I GATC 5 cut(s) 676, 727, 1131, 1184, 1246
LmnI GCTCC 1 cut(s) 661
Lsp1109I GCAGC 2 cut(s) 562, 932
MaeI CTAG 2 cut(s) 770, 891
MaeII ACGT 1 cut(s) 446
MaeIII GTNAC 3 cut(s) 161, 1088, 1221
MalI GATC 5 cut(s) 678, 729, 1133, 1186, 1248
MboI GATC 5 cut(s) 676, 727, 1131, 1184, 1246
MboII GAAGA 3 cut(s) 122, 441, 444
MfeI CAATTG 1 cut(s) 1217
MflI RGATCY 2 cut(s) 1131, 1184
MhlI GDGCHC 5 cut(s) 186, 658, 703, 747, 904
MlyI GAGTC 5 cut(s) 145, 229, 329, 566, 1109
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 9 cut(s) 203, 281, 519, 705, 915, 925, 967, 1010, 1230
MroI TCCGGA 1 cut(s) 658
MseI TTAA 6 cut(s) 390, 732, 795, 927, 1062, 1241
MslI CAYNNNNRTG 3 cut(s) 548, 752, 758
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 1 cut(s) 790
MunI CAATTG 1 cut(s) 1217
MvaI CCWGG 1 cut(s) 790
MwoI GCNNNNNNNGC 2 cut(s) 995, 1176
NdeII GATC 5 cut(s) 676, 727, 1131, 1184, 1246
NheI GCTAGC 1 cut(s) 769
NlaIII CATG 4 cut(s) 118, 683, 757, 1195
NlaIV GGNNCC 2 cut(s) 190, 251
NmuCI GTSAC 1 cut(s) 1088
NspV TTCGAA 1 cut(s) 223
PagI TCATGA 1 cut(s) 679
PfeI GAWTC 4 cut(s) 289, 417, 815, 1257
PflMI CCANNNNNTGG 1 cut(s) 246
PkrI GCNGC 2 cut(s) 577, 947
PleI GAGTC 5 cut(s) 144, 229, 328, 565, 1109
PpsI GAGTC 5 cut(s) 144, 229, 328, 565, 1109
PshBI ATTAAT 1 cut(s) 390
PsiI TTATAA 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 788
PspGI CCWGG 1 cut(s) 788
PspN4I GGNNCC 2 cut(s) 190, 251
PspPI GGNCC 1 cut(s) 1203
PsuI RGATCY 2 cut(s) 1131, 1184
RsaI GTAC 2 cut(s) 445, 603
RsaNI GTAC 2 cut(s) 444, 602
RseI CAYNNNNRTG 3 cut(s) 548, 752, 758
SaqAI TTAA 6 cut(s) 390, 732, 795, 927, 1062, 1241
SatI GCNGC 2 cut(s) 576, 946
Sau3AI GATC 5 cut(s) 676, 727, 1131, 1184, 1246
Sau96I GGNCC 1 cut(s) 1203
ScaI AGTACT 1 cut(s) 603
SchI GAGTC 5 cut(s) 145, 229, 329, 566, 1109
ScrFI CCNGG 1 cut(s) 790
SduI GDGCHC 5 cut(s) 186, 658, 703, 747, 904
SfcI CTRYAG 3 cut(s) 15, 1127, 1135
SfuI TTCGAA 1 cut(s) 223
SinI GGWCC 1 cut(s) 1203
SmiMI CAYNNNNRTG 3 cut(s) 548, 752, 758
SmlI CTYRAG 2 cut(s) 317, 1068
SmoI CTYRAG 2 cut(s) 317, 1068
SsiI CCGC 2 cut(s) 370, 512
SspMI CTAG 2 cut(s) 770, 891
StyD4I CCNGG 1 cut(s) 788
TaaI ACNGT 5 cut(s) 16, 167, 572, 971, 1078
TaiI ACGT 1 cut(s) 449
TaqI TCGA 2 cut(s) 108, 223
TatI WGTACW 1 cut(s) 601
TfiI GAWTC 4 cut(s) 289, 417, 815, 1257
Tru1I TTAA 6 cut(s) 390, 732, 795, 927, 1062, 1241
Tru9I TTAA 6 cut(s) 390, 732, 795, 927, 1062, 1241
TscAI CASTG 3 cut(s) 19, 57, 577
TseFI GTSAC 1 cut(s) 1088
TseI GCWGC 2 cut(s) 575, 945
Tsp45I GTSAC 1 cut(s) 1088
TspDTI ATGAA 2 cut(s) 353, 818
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 3 cut(s) 19, 57, 577
Van91I CCANNNNNTGG 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 1203
VspI ATTAAT 1 cut(s) 390
XagI CCTNNNNNAGG 1 cut(s) 929
XapI RAATTY 7 cut(s) 226, 310, 340, 475, 784, 935, 1022
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 2 cut(s) 770, 891
ZrmI AGTACT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.