MD10G1230700.v1.1

Peroxisomal 2,4-dienoyl-CoA reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0028178
Physical Location & Seq
Forward (+)
32762580 .. 32763397
818 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1230700.v1.1.491

Sequence Viewer

Length: 273 bp
ATGCTTCGATTGCCGTCATGGGCCCTCGTAAGCATGTCATTGACTCTGCTGTCGATGCCCTTCATTTCCAAGGCGTTTCTGGCGATGTGCGCAGCTAGAGTTTTGGAATCGACAGTGAAGCATTTTGGTAGGTTTGACATCCTTGTGAATGCTGCAGCTGGAAATTTCCTTTGTCCCGTCGGAGGATGCATCCGCAAATGGATTTCGAACAGGTTCAATCTCTACGAGCATCAAAACATAGCTAGTTTAATTTTACGGATTCTTGTTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

91

Amino Acids

10.07

Weight (kDa)

10.07

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028178)

Species Orthologous Gene IDs
malus_domestica MD10G1230700.v1.1
pyrus_communis pycom10g19410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 49
Acc16I TGCGCA 1 cut(s) 91
AciI CCGC 1 cut(s) 193
AcsI RAATTY 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 182
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 3 cut(s) 95, 158, 242
AluI AGCT 3 cut(s) 95, 158, 242
AoxI GGCC 1 cut(s) 21
ApaI GGGCCC 1 cut(s) 25
ApeKI GCWGC 3 cut(s) 92, 152, 155
ApoI RAATTY 1 cut(s) 163
Asp700I GAANNNNTTC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 21, 22
AsuII TTCGAA 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 25
BbvI GCAGC 3 cut(s) 104, 139, 167
BfaI CTAG 2 cut(s) 96, 243
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 3 cut(s) 93, 153, 156
BlsI GCNGC 3 cut(s) 94, 154, 157
BmgT120I GGNCC 2 cut(s) 21, 22
BmiI GGNNCC 1 cut(s) 23
BmsI GCATC 4 cut(s) 45, 176, 198, 238
Bpu14I TTCGAA 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 3 cut(s) 138, 189, 191
BseLI CCNNNNNNNGG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 3 cut(s) 104, 139, 167
BshFI GGCC 1 cut(s) 23
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 206
Bsp120I GGGCCC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 25
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 23
BspMAI CTGCAG 1 cut(s) 157
BspT104I TTCGAA 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 115
BstBI TTCGAA 1 cut(s) 206
BstF5I GGATG 3 cut(s) 138, 189, 191
BstHHI GCGC 1 cut(s) 92
BstMWI GCNNNNNNNGC 4 cut(s) 10, 55, 80, 89
BstNSI RCATGY 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 25
BstV1I GCAGC 3 cut(s) 104, 139, 167
BsuRI GGCC 1 cut(s) 23
BtgZI GCGATG 1 cut(s) 98
BtsCI GGATG 3 cut(s) 138, 189, 191
BtsIMutI CAGTG 1 cut(s) 120
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 21, 22
CviAII CATG 2 cut(s) 18, 34
CviJI RGCY 4 cut(s) 23, 95, 158, 242
CviKI_1 RGCY 4 cut(s) 23, 95, 158, 242
DrdI GACNNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 21, 37
FaiI YATR 3 cut(s) 19, 35, 239
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 17, 33
Fnu4HI GCNGC 3 cut(s) 93, 153, 156
FokI GGATG 3 cut(s) 125, 176, 198
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 3 cut(s) 93, 153, 156
FspBI CTAG 2 cut(s) 96, 243
FspI TGCGCA 1 cut(s) 91
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 93, 153, 156
HaeIII GGCC 1 cut(s) 23
HhaI GCGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 21, 37
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 3 cut(s) 43, 107, 259
Hpy188I TCNGA 1 cut(s) 182
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 155, 189
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 55, 80, 89
Hsp92II CATG 2 cut(s) 21, 37
HspAI GCGC 1 cut(s) 90
LpnPI CCDG 3 cut(s) 65, 144, 196
Lsp1109I GCAGC 3 cut(s) 104, 139, 167
LweI GCATC 4 cut(s) 45, 176, 198, 238
MaeI CTAG 2 cut(s) 96, 243
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 2 cut(s) 163, 249
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 2 cut(s) 35, 176
Mph1103I ATGCAT 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 212
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 154
MwoI GCNNNNNNNGC 4 cut(s) 10, 55, 80, 89
NlaIII CATG 2 cut(s) 21, 37
NlaIV GGNNCC 1 cut(s) 23
NsbI TGCGCA 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 191
NspI RCATGY 1 cut(s) 37
NspV TTCGAA 1 cut(s) 206
PctI GAATGC 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 2 cut(s) 107, 259
PkrI GCNGC 3 cut(s) 94, 154, 157
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 23
PspOMI GGGCCC 1 cut(s) 21
PspPI GGNCC 2 cut(s) 21, 22
PstI CTGCAG 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 3 cut(s) 93, 153, 156
Sau96I GGNCC 2 cut(s) 21, 22
SchI GAGTC 1 cut(s) 37
SduI GDGCHC 1 cut(s) 25
SetI ASST 5 cut(s) 97, 134, 160, 215, 244
SfaNI GCATC 4 cut(s) 45, 176, 198, 238
SfcI CTRYAG 1 cut(s) 153
SfuI TTCGAA 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 143
Sse9I AATT 2 cut(s) 163, 249
SsiI CCGC 1 cut(s) 193
SspMI CTAG 2 cut(s) 96, 243
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 4 cut(s) 7, 53, 110, 206
TasI AATT 2 cut(s) 163, 249
TfiI GAWTC 2 cut(s) 107, 259
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 120
TseI GCWGC 3 cut(s) 92, 152, 155
TspDTI ATGAA 1 cut(s) 52
TspGWI ACGGA 2 cut(s) 258, 271
TspRI CASTG 1 cut(s) 120
XapI RAATTY 1 cut(s) 163
XceI RCATGY 1 cut(s) 37
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 2 cut(s) 96, 243
Zsp2I ATGCAT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.