Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0028230

Physical Location & Seq

Genomic Coordinates Reverse (-)

32837566 .. 32838844

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1232000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTCTCTTTACAATCTCTTCAGTTCGTCGTTGTTGTGCCAAGGTTATCACCAAAAGAGAGCATGAAAAATTCTGCAAATGATGGGTTGCAAACAAGAAGCAGGTCAACTCCAAAGGAATCTAACGGTGGAAGTGACAGAAAGGACAACCGTGAAGCAATTGTTGGGCTGTTGATTTCCGATTCAGTTGTTAAAGGGCATGTAATGATTCAGTTGTATGGCATATACAGCCAGTTCTTGGATTCAAAGAGATCCGTTGCTACACAGTCGAGAGATGCAAAAGGCAAGAGGGCAACCCTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA PEX-1N

Protein Analysis

102

Amino Acids

11.09

Weight (kDa)

10.16

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028230)

Species	Orthologous Gene IDs
malus_domestica	MD10G1232000.v1.1
pyrus_communis	pycom10g19530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	93
AccB7I	CCANNNNNTGG	1 cut(s)	238
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	246
AjnI	CCWGG	1 cut(s)	297
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AlwI	GGATC	1 cut(s)	246
AoxI	GGCC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	42
BccI	CCATC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	41, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	41, 297
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	238
BsnI	GGCC	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	302
BspMI	ACCTGC	1 cut(s)	93
BspPI	GGATC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	41, 297
BssMI	GATC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	3 cut(s)	128, 152, 267
Bst6I	CTCTTC	1 cut(s)	24
BstKTI	GATC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 299
BstNI	CCWGG	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	302
BveI	ACCTGC	1 cut(s)	93
CviAII	CATG	2 cut(s)	64, 200
CviJI	RGCY	3 cut(s)	169, 231, 302
CviKI_1	RGCY	3 cut(s)	169, 231, 302
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	2 cut(s)	67, 203
FaiI	YATR	5 cut(s)	65, 201, 219, 224, 226
FatI	CATG	2 cut(s)	63, 199
HaeIII	GGCC	1 cut(s)	302
Hin1II	CATG	2 cut(s)	67, 203
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	4 cut(s)	119, 182, 208, 242
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	270
Hpy8I	GTNNAC	1 cut(s)	108
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4III	ACNGT	3 cut(s)	128, 152, 267
HpyCH4V	TGCA	3 cut(s)	77, 91, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 299
Hsp92II	CATG	2 cut(s)	67, 203
Kzo9I	GATC	1 cut(s)	251
LpnPI	CCDG	3 cut(s)	88, 245, 284
LweI	GCATC	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	1 cut(s)	11
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	251
MluCI	AATT	2 cut(s)	70, 159
MnlI	CCTC	1 cut(s)	282
MseI	TTAA	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	228, 299
NdeII	GATC	1 cut(s)	251
NlaIII	CATG	2 cut(s)	67, 203
NmuCI	GTSAC	1 cut(s)	134
NspI	RCATGY	1 cut(s)	203
PfeI	GAWTC	4 cut(s)	119, 182, 208, 242
PflMI	CCANNNNNTGG	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	299
SetI	ASST	2 cut(s)	47, 107
SfaNI	GCATC	1 cut(s)	265
Sse9I	AATT	2 cut(s)	70, 159
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	3 cut(s)	128, 152, 267
TaqI	TCGA	1 cut(s)	269
TasI	AATT	2 cut(s)	70, 159
TfiI	GAWTC	4 cut(s)	119, 182, 208, 242
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	244
Van91I	CCANNNNNTGG	1 cut(s)	238
XapI	RAATTY	1 cut(s)	70
XceI	RCATGY	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.