MD10G1265900.v1.1

purine permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0028180
Physical Location & Seq
Reverse (-)
35908984 .. 35909316
333 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1265900.v1.1.491

Sequence Viewer

Length: 333 bp
ATGGCAAGATTATACTACGACAAAGGTGGCAAAAGCAAATGGCTGGGAGCCCTAGTACAACTTGCTGGCTTCCCTATCCTCCTTCCGTCTTATTTCTTCCCAACAAAAAGAAAATATCCAACCACAAACATTAATACTAGTACTACTACCGAATCAAAAGAACCCTCGACTTTAATCCTTGCATCAATTTATGTCTCTCTTGACCTTCAAATAGCCTTGCGCTGCTTATTGCACTCGGTTGGATTATCTTACCTTCCCGTCTCTACTTATTCCCTCATTTGCGCATCCCAATTGGCATTCAACGCGCTATTCTCCTTCTTCCTTAACTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUNUT

Protein Analysis

111

Amino Acids

12.21

Weight (kDa)

9.39

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUNUT PF16913 1 - 110 3.3e-31 Purine nucleobase transmembrane transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028180)

Species Orthologous Gene IDs
malus_domestica MD10G1265900.v1.1
pyrus_communis pycom10g22170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 283
AccII CGCG 1 cut(s) 305
AfaI GTAC 2 cut(s) 57, 142
AgsI TTSAA 2 cut(s) 209, 301
AhlI ACTAGT 1 cut(s) 137
Alw26I GTCTC 2 cut(s) 199, 265
ApeKI GCWGC 1 cut(s) 222
AseI ATTAAT 1 cut(s) 132
AspLEI GCGC 3 cut(s) 222, 284, 307
BanII GRGCYC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 199, 265
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 2 cut(s) 53, 138
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
BmcAI AGTACT 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 2 cut(s) 191, 293
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
BseGI GGATG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 209
BseYI CCCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 305
BsmAI GTCTC 2 cut(s) 199, 265
BsmBI CGTCTC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 52
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 284
BstFNI CGCG 1 cut(s) 305
BstHHI GCGC 3 cut(s) 222, 284, 307
BstMAI GTCTC 2 cut(s) 199, 265
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 284
Cac8I GCNNGC 1 cut(s) 67
CfoI GCGC 3 cut(s) 222, 284, 307
Csp6I GTAC 2 cut(s) 56, 141
CviJI RGCY 4 cut(s) 43, 50, 69, 215
CviKI_1 RGCY 4 cut(s) 43, 50, 69, 215
CviQI GTAC 2 cut(s) 56, 141
Eco24I GRGCYC 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 265
FaiI YATR 2 cut(s) 13, 192
Fnu4HI GCNGC 1 cut(s) 223
FokI GGATG 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 223
FspBI CTAG 2 cut(s) 53, 138
FspI TGCGCA 1 cut(s) 283
GlaI GCGC 3 cut(s) 221, 283, 306
GluI GCNGC 1 cut(s) 223
GsaI CCCAGC 1 cut(s) 47
HhaI GCGC 3 cut(s) 222, 284, 307
Hin6I GCGC 3 cut(s) 220, 282, 305
HinP1I GCGC 3 cut(s) 220, 282, 305
HinfI GANTC 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 200
HpyAV CCTTC 4 cut(s) 92, 215, 263, 325
HpyCH4V TGCA 2 cut(s) 182, 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HspAI GCGC 3 cut(s) 220, 282, 305
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 2 cut(s) 29, 51
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 2 cut(s) 191, 293
MaeI CTAG 2 cut(s) 53, 138
MboII GAAGA 2 cut(s) 88, 310
MfeI CAATTG 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 2 cut(s) 186, 290
MmeI TCCRAC 2 cut(s) 143, 220
MnlI CCTC 3 cut(s) 89, 175, 284
MseI TTAA 3 cut(s) 132, 173, 324
MunI CAATTG 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 296
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 302
NlaIV GGNNCC 1 cut(s) 49
NsbI TGCGCA 1 cut(s) 283
PctI GAATGC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 224
PshBI ATTAAT 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 49
RsaI GTAC 2 cut(s) 57, 142
RsaNI GTAC 2 cut(s) 56, 141
SaqAI TTAA 3 cut(s) 132, 173, 324
SatI GCNGC 1 cut(s) 223
ScaI AGTACT 1 cut(s) 142
SduI GDGCHC 1 cut(s) 52
SetI ASST 3 cut(s) 28, 207, 255
SfaNI GCATC 2 cut(s) 191, 293
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 2 cut(s) 186, 290
SspMI CTAG 2 cut(s) 53, 138
TaqI TCGA 1 cut(s) 167
TasI AATT 2 cut(s) 186, 290
TatI WGTACW 2 cut(s) 55, 140
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 3 cut(s) 132, 173, 324
Tru9I TTAA 3 cut(s) 132, 173, 324
TseI GCWGC 1 cut(s) 222
TspGWI ACGGA 1 cut(s) 75
VspI ATTAAT 1 cut(s) 132
XspI CTAG 2 cut(s) 53, 138
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.