MD10G1290100.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
37872621 .. 37873577
957 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1290100.v1.1.491

Sequence Viewer

Length: 135 bp
ATGGCGGTGGAGCTGTTTGTGTTGGGGTGCACCGGAGTTGTGGTGTTCTTTCACGGAGCCAGTTTCTTGTTCCACCTTCTTACCCAACACCTTGCTGTTCGATCTCTCAGTTTTCTGGGATTTGTTGGGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

45

Amino Acids

4.85

Weight (kDa)

6.8

Isoelectric Point (pI)

22.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0028157)

Species Orthologous Gene IDs
malus_domestica MD10G1290100.v1.1
rosa_chinensis RchiOBHm_Chr5g0009051

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw21I GWGCWC 1 cut(s) 32
Alw44I GTGCAC 1 cut(s) 28
ApaLI GTGCAC 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bse1I ACTGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 60
BseSI GKGCMC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 101
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 60
BssMI GATC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 107
BstKTI GATC 1 cut(s) 104
BstMBI GATC 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 32
CviJI RGCY 2 cut(s) 13, 59
CviKI_1 RGCY 2 cut(s) 13, 59
DdeI CTNAG 1 cut(s) 107
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
HapII CCGG 1 cut(s) 33
HpaII CCGG 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 86
HpyCH4V TGCA 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 107
Kzo9I GATC 1 cut(s) 101
LmnI GCTCC 2 cut(s) 10, 56
LpnPI CCDG 3 cut(s) 46, 73, 101
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 32
MspI CCGG 1 cut(s) 33
NdeII GATC 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 32
SetI ASST 3 cut(s) 15, 78, 93
SgeI CNNG 6 cut(s) 45, 65, 72, 79, 104, 128
SsiI CCGC 1 cut(s) 5
TaqI TCGA 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 69
VneI GTGCAC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.