MD10G1320700.v1.1

Argonaute

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0028187
Physical Location & Seq
Reverse (-)
40232868 .. 40235733
2866 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1320700.v1.1.491

Sequence Viewer

Length: 777 bp
ATGGGTTTCAGGTTGTTCGGTTCTTTCTCTCCGCCTTCACCTCTCTCCCTATCAGAGTGCAAAGAAAGTCGACTGTGCGTTCTGAATTTTAGGTCTTGGGAAATGGAGTTTTTAAATCCTGAAGGAGTTGAACTTCCTCCACCTCCACCTCCACCCATGATTCCTCCTCATGTTGTCATGCTTGTAGCAGAAGAAAAGCCTGTTGAGCTATTTACAAATACATCAACTCCAAAACTTATTCCCATGGCAAGGCCTGCCAATGGAACAAAAGGGGCAAAGGATTCTGACCAACCATTTCAAAGTGGCGGTGAACAAGTCCTATGGAGAGAAAGAATTGCTTACTGTGGCGGTGACCAACCATTTCAGAATGCAAGCCCTGGGAGGGGCTCTGAGCATGTTGGGAGTGAGGGAGACGGGACGAGAGTTGAGAAGCAATTTCATTCCAAAACGTTAAAGCTGCAGATCAGTTTTGATTCCTCTTCATTGGAGGCAGTGTGGGTTCTTGATATCATCCTAAGGCAGAATGTAGCAAAACAGTTCTTTCTGAAATCAAAACAAGAGCAGTATGGTGATGGAGAAGAAATTACATGTTCTGAATACTTTGCCGTTTATAAAAACCTACCGGTGTGTGAATCAGCAGATTTCCCATGCATCACCGTTGCGAAACTAAAGAAGCTAGCTTACTTTCCGCTTGAGGATAATGAGTGTGATTGCATTAGGAATTTGCAGAGGGATGGAGTTGAGCCTCTTCTAAGTATGACTCAGCTTCTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

259

Amino Acids

28.81

Weight (kDa)

5.08

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028187)

Species Orthologous Gene IDs
malus_domestica MD10G1320700.v1.1
pyrus_communis pycom10g27130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 612
AccI GTMKAC 1 cut(s) 70
AciI CCGC 4 cut(s) 32, 306, 348, 689
AclI AACGTT 1 cut(s) 449
AcsI RAATTY 2 cut(s) 85, 721
AcuI CTGAAG 1 cut(s) 141
AfiI CCNNNNNNNGG 4 cut(s) 249, 260, 382, 383
AflIII ACRYGT 1 cut(s) 587
AgeI ACCGGT 1 cut(s) 622
AgsI TTSAA 2 cut(s) 131, 299
AjnI CCWGG 1 cut(s) 376
AluBI AGCT 5 cut(s) 208, 457, 676, 680, 766
AluI AGCT 5 cut(s) 208, 457, 676, 680, 766
Alw26I GTCTC 1 cut(s) 405
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 2 cut(s) 85, 721
AsiGI ACCGGT 1 cut(s) 622
AsuHPI GGTGA 5 cut(s) 30, 320, 362, 581, 646
AsuNHI GCTAGC 1 cut(s) 676
AxyI CCTNAGG 1 cut(s) 515
BanII GRGCYC 1 cut(s) 389
BarI GAAGNNNNNNTAC 2 cut(s) 665, 697
BbvI GCAGC 1 cut(s) 444
BccI CCATC 2 cut(s) 566, 728
BceAI ACGGC 1 cut(s) 590
BciT130I CCWGG 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 405
BfaI CTAG 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 458
BisI GCNGC 1 cut(s) 458
BlsI GCNGC 1 cut(s) 459
Bme1390I CCNGG 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 1 cut(s) 660
BmtI GCTAGC 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 713
BsaJI CCNNGG 3 cut(s) 243, 376, 377
BsaWI WCCGGW 1 cut(s) 622
BsaXI ACNNNNNCTCC 4 cut(s) 211, 241, 479, 509
Bsc4I CCNNNNNNNGG 4 cut(s) 249, 260, 382, 383
Bse118I RCCGGY 1 cut(s) 622
Bse21I CCTNAGG 1 cut(s) 515
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 3 cut(s) 243, 376, 377
BseGI GGATG 2 cut(s) 510, 739
BseLI CCNNNNNNNGG 4 cut(s) 249, 260, 382, 383
BseMII CTCAG 2 cut(s) 381, 776
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 444
BshFI GGCC 1 cut(s) 253
BshTI ACCGGT 1 cut(s) 622
BsiSI CCGG 1 cut(s) 623
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 4 cut(s) 249, 260, 382, 383
BsmAI GTCTC 1 cut(s) 405
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 430
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 389
Bsp143I GATC 1 cut(s) 462
Bsp19I CCATGG 1 cut(s) 243
BspACI CCGC 4 cut(s) 32, 306, 348, 689
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 2 cut(s) 382, 775
BspMAI CTGCAG 1 cut(s) 462
BspOI GCTAGC 1 cut(s) 680
BsrFI RCCGGY 1 cut(s) 622
BssAI RCCGGY 1 cut(s) 622
BssECI CCNNGG 3 cut(s) 243, 376, 377
BssMI GATC 1 cut(s) 462
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 4 cut(s) 75, 344, 537, 658
Bst6I CTCTTC 2 cut(s) 484, 753
BstAPI GCANNNNNTGC 1 cut(s) 254
BstC8I GCNNGC 3 cut(s) 255, 373, 678
BstDEI CTNAG 4 cut(s) 390, 515, 752, 762
BstDSI CCRYGG 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 350
BstF5I GGATG 2 cut(s) 510, 739
BstKTI GATC 1 cut(s) 465
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 1 cut(s) 462
BstMWI GCNNNNNNNGC 2 cut(s) 205, 254
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 2 cut(s) 398, 591
BstPI GGTNACC 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 458
BstV1I GCAGC 1 cut(s) 444
Bsu36I CCTNAGG 1 cut(s) 515
BsuRI GGCC 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 243
BtsCI GGATG 2 cut(s) 510, 739
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 1 cut(s) 498
Cac8I GCNNGC 3 cut(s) 255, 373, 678
Cfr10I RCCGGY 1 cut(s) 622
CspAI ACCGGT 1 cut(s) 622
CviAII CATG 7 cut(s) 157, 170, 178, 244, 395, 588, 648
DdeI CTNAG 4 cut(s) 390, 515, 752, 762
DpnI GATC 1 cut(s) 464
DpnII GATC 1 cut(s) 462
DraI TTTAAA 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 484, 753
EarI CTCTTC 2 cut(s) 484, 753
EciI GGCGGA 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 243
Eco147I AGGCCT 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 389
Eco32I GATATC 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 515
Eco91I GGTNACC 1 cut(s) 350
EcoO65I GGTNACC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 376
EcoRV GATATC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 653
EcoT38I GRGCYC 1 cut(s) 389
ErhI CCWWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 7 cut(s) 160, 173, 181, 247, 398, 591, 651
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FaqI GGGAC 1 cut(s) 430
FatI CATG 7 cut(s) 156, 169, 177, 243, 394, 587, 647
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 458
FokI GGATG 2 cut(s) 497, 746
FriOI GRGCYC 1 cut(s) 389
Fsp4HI GCNGC 1 cut(s) 458
FspBI CTAG 1 cut(s) 677
GluI GCNGC 1 cut(s) 458
HaeIII GGCC 1 cut(s) 253
HapII CCGG 1 cut(s) 623
Hin1II CATG 7 cut(s) 160, 173, 181, 247, 398, 591, 651
HincII GTYRAC 1 cut(s) 71
HindII GTYRAC 1 cut(s) 71
HinfI GANTC 5 cut(s) 160, 281, 473, 632, 760
HpaII CCGG 1 cut(s) 623
HphI GGTGA 5 cut(s) 30, 320, 362, 581, 646
Hpy166II GTNNAC 2 cut(s) 71, 311
Hpy188I TCNGA 7 cut(s) 55, 84, 286, 366, 391, 546, 595
Hpy188III TCNNGA 2 cut(s) 119, 503
Hpy8I GTNNAC 2 cut(s) 71, 311
HpyAV CCTTC 2 cut(s) 45, 116
HpyCH4III ACNGT 4 cut(s) 75, 344, 537, 658
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 6 cut(s) 60, 371, 460, 651, 714, 727
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 254
HpyF3I CTNAG 4 cut(s) 390, 515, 752, 762
HpySE526I ACGT 1 cut(s) 449
Hsp92II CATG 7 cut(s) 160, 173, 181, 247, 398, 591, 651
Kzo9I GATC 1 cut(s) 462
LpnPI CCDG 6 cut(s) 132, 213, 267, 363, 390, 636
Lsp1109I GCAGC 1 cut(s) 444
LweI GCATC 1 cut(s) 660
MaeI CTAG 1 cut(s) 677
MaeII ACGT 1 cut(s) 449
MaeIII GTNAC 1 cut(s) 350
MalI GATC 1 cut(s) 464
MboI GATC 1 cut(s) 462
MboII GAAGA 4 cut(s) 203, 471, 590, 740
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 5 cut(s) 85, 333, 434, 582, 721
MlyI GAGTC 1 cut(s) 754
Mph1103I ATGCAT 1 cut(s) 653
MseI TTAA 3 cut(s) 113, 452, 775
MspI CCGG 1 cut(s) 623
MspR9I CCNGG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 205, 254
NcoI CCATGG 1 cut(s) 243
NdeII GATC 1 cut(s) 462
NheI GCTAGC 1 cut(s) 676
NlaIII CATG 7 cut(s) 160, 173, 181, 247, 398, 591, 651
NmuCI GTSAC 1 cut(s) 350
NsiI ATGCAT 1 cut(s) 653
NspI RCATGY 2 cut(s) 398, 591
PasI CCCWGGG 1 cut(s) 377
PceI AGGCCT 1 cut(s) 253
PciI ACATGT 1 cut(s) 587
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 4 cut(s) 160, 281, 473, 632
PinAI ACCGGT 1 cut(s) 622
PkrI GCNGC 1 cut(s) 459
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
PscI ACATGT 1 cut(s) 587
PsiI TTATAA 1 cut(s) 612
Psp1406I AACGTT 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 376
PspEI GGTNACC 1 cut(s) 350
PspGI CCWGG 1 cut(s) 376
PstI CTGCAG 1 cut(s) 462
SalI GTCGAC 1 cut(s) 69
SaqAI TTAA 3 cut(s) 113, 452, 775
SatI GCNGC 1 cut(s) 458
Sau3AI GATC 1 cut(s) 462
SchI GAGTC 1 cut(s) 754
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 389
SfaNI GCATC 1 cut(s) 660
SfcI CTRYAG 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 5 cut(s) 85, 333, 434, 582, 721
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 4 cut(s) 32, 306, 348, 689
SspMI CTAG 1 cut(s) 677
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 4 cut(s) 75, 344, 537, 658
TaiI ACGT 1 cut(s) 452
TaqI TCGA 1 cut(s) 70
TasI AATT 5 cut(s) 85, 333, 434, 582, 721
TfiI GAWTC 4 cut(s) 160, 281, 473, 632
Tru1I TTAA 3 cut(s) 113, 452, 775
Tru9I TTAA 3 cut(s) 113, 452, 775
TscAI CASTG 1 cut(s) 498
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 1 cut(s) 457
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 428, 471
TspRI CASTG 1 cut(s) 498
XapI RAATTY 2 cut(s) 85, 721
XceI RCATGY 2 cut(s) 398, 591
XmiI GTMKAC 1 cut(s) 70
XspI CTAG 1 cut(s) 677
Zsp2I ATGCAT 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.