Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0028886

Physical Location & Seq

Genomic Coordinates Forward (+)

6117969 .. 6119268

Gene Structure 1300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1072000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCTGAAGTTTTTGCTCTGTGTGGAAAATTTGATGTTTGAAATTGTAGTTTCTTTTGATAGTTCAGGAGTTCGTCTTGTCCGTGGGATCGTTAAGGATGTCAAGGATAAGAAAATAATTCTTAATGATGGCACAGAGGTTCCTTATGGTCTTTTGGTATGGTCTACCGGTGTTGCAGAGAGGCAAGGAAAGTATTTGGCCAATCTACTGAACAAAATTGGTAAAGCTGGTGGAGGGCGTGCGAACGCTGCAAGAGATTATAAATACAAGGAACCATTTGTGTACAAGCATTTAGGAAGCATGGCGACTCTTGGGAGATACAGGGCTCTCATGGACCTCAGACGGAGCAAGGCGGGTAATGGCATATCTATGGCCGGGTTCTCTAGTTGGTTTAGTTGGCGTGGCGCGTATTTAACCCGAGTCATAAGCTGGAGGAACAGATTCTATGTGTTGATTAACTGGCTTACAACATTAGTGTTTGGGCGTGATACAAGCAAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005777 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031304 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0098573 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

168

Amino Acids

18.93

Weight (kDa)

10.2

Isoelectric Point (pI)

22.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDH2_C	PF22366	97 - 163	2.2e-13	NDH2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0028886)

Species	Orthologous Gene IDs
malus_domestica	MD11G1072000.v1.1
rosa_multiflora	Rmu_sc0002367.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	164
AccII	CGCG	1 cut(s)	407
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	2 cut(s)	198, 372
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	284
AgeI	ACCGGT	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	41
AluBI	AGCT	2 cut(s)	227, 429
AluI	AGCT	2 cut(s)	227, 429
AlwI	GGATC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	2 cut(s)	198, 372
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	28
AsiGI	ACCGGT	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	334
AsuC2I	CCSGG	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	417
AvaII	GGWCC	1 cut(s)	334
BalI	TGGCCA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	328
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	376
BfaI	CTAG	2 cut(s)	384, 502
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	2 cut(s)	141, 273
BmrFI	CCNGG	1 cut(s)	376
BpmI	CTGGAG	1 cut(s)	451
BpuMI	CCSGG	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	464
BseXI	GCAGC	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	407
BshFI	GGCC	2 cut(s)	200, 374
BshTI	ACCGGT	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	2 cut(s)	168, 375
BsnI	GGCC	2 cut(s)	200, 374
BsoBI	CYCGRG	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	2 cut(s)	200, 374
BspCNI	CTCAG	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	407
BspLI	GGNNCC	2 cut(s)	141, 273
BspPI	GGATC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	167
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	464
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	87
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	374
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	200, 374
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	407
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	283
CspAI	ACCGGT	1 cut(s)	167
CviAII	CATG	2 cut(s)	301, 331
CviJI	RGCY	6 cut(s)	200, 227, 326, 374, 429, 463
CviKI_1	RGCY	6 cut(s)	200, 227, 326, 374, 429, 463
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
EaeI	YGGCCR	2 cut(s)	198, 372
Eco24I	GRGCYC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	328
FaeI	CATG	2 cut(s)	304, 334
FaiI	YATR	9 cut(s)	147, 160, 261, 302, 332, 365, 371, 425, 447
FatI	CATG	2 cut(s)	300, 330
FauI	CCCGC	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	164
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	384, 502
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	1 cut(s)	249
GsuI	CTGGAG	1 cut(s)	451
HaeIII	GGCC	2 cut(s)	200, 374
HapII	CCGG	2 cut(s)	168, 375
HhaI	GCGC	1 cut(s)	407
Hin1II	CATG	2 cut(s)	304, 334
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HinfI	GANTC	3 cut(s)	307, 420, 441
HpaII	CCGG	2 cut(s)	168, 375
Hpy166II	GTNNAC	2 cut(s)	165, 283
Hpy188I	TCNGA	1 cut(s)	341
Hpy188III	TCNNGA	1 cut(s)	66
Hpy8I	GTNNAC	2 cut(s)	165, 283
HpyCH4V	TGCA	2 cut(s)	176, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	338
Hsp92II	CATG	2 cut(s)	304, 334
HspAI	GCGC	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	345
LpnPI	CCDG	7 cut(s)	51, 181, 213, 307, 388, 415, 445
Lsp1109I	GCAGC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	384, 502
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	328
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	4 cut(s)	28, 42, 117, 216
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	301, 429
MnlI	CCTC	5 cut(s)	130, 174, 227, 347, 426
Mox20I	TGGCCA	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	440
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	4 cut(s)	93, 123, 413, 456
MslI	CAYNNNNRTG	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	2 cut(s)	168, 375
MspR9I	CCNGG	1 cut(s)	376
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	2 cut(s)	304, 334
NlaIV	GGNNCC	2 cut(s)	141, 273
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	441
PinAI	ACCGGT	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	2 cut(s)	301, 428
PpsI	GAGTC	2 cut(s)	301, 428
PsiI	TTATAA	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	141, 273
PspPI	GGNCC	1 cut(s)	334
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	4 cut(s)	93, 123, 413, 456
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	334
SchI	GAGTC	2 cut(s)	301, 429
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	4 cut(s)	141, 229, 339, 431
SinI	GGWCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	4 cut(s)	28, 42, 117, 216
SsiI	CCGC	1 cut(s)	353
SspMI	CTAG	2 cut(s)	384, 502
StyD4I	CCNGG	1 cut(s)	374
TasI	AATT	4 cut(s)	28, 42, 117, 216
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	4 cut(s)	93, 123, 413, 456
Tru9I	TTAA	4 cut(s)	93, 123, 413, 456
TseI	GCWGC	1 cut(s)	248
TspGWI	ACGGA	2 cut(s)	71, 358
VpaK11BI	GGWCC	1 cut(s)	334
XapI	RAATTY	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	2 cut(s)	384, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.