Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0028910

Physical Location & Seq

Genomic Coordinates Forward (+)

30036993 .. 30037532

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1205800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAATGTCAACGAGAAATGCATGTCGTTGAAGATCAAATGGGGTGTGAACTGATGCAGGTTGACAACAGGACCGTGAAGTCTTTGGCACCCTACACCACAAAGTTCATGAAACTGCTAACATTTAATCTCAAGATAGGAGCCAATCTAGCCGCTGGCATGGAAGAAATGATACCGGATTTGAGCAGGGAACTTGCCCACCTGGCCGATTCATCCCTCCTTTATGGAGCCGCAGGTGCAGGGGCAGTTGCTTCCGGTGCAGTGGGGGCTGCAGCGATTGGACAGGGAAGGAGCAGAAGCAAGGCTGCAGAAAGCTCAAGAGACATCCAGCAAGATCAGAGAACCGCGCAACAATGGGTTCTGGATTTTCTAAGGGAACGGAGATGCTCAACCAGAAAGGATATCGCTGAGAAGTTCAGGTTATGGAGAGTGAGATACAGAGACGATAGTCAGATTGCATGGATCTGCAGGAGGCATATTAACCTCAGAGCACATGAAATAATTGAAGTGCCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009956 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010305 GO:0010540 GO:0010817 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0048366 GO:0048367 GO:0048507 GO:0048532 GO:0048731 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COR LRR_6 Roc

Protein Analysis

173

Amino Acids

19.43

Weight (kDa)

8.76

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028910)

Species	Orthologous Gene IDs
malus_domestica	MD11G1205800.v1.1
pyrus_communis	pycom11g17850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
AasI	GACNNNNNNGTC	1 cut(s)	79
Acc36I	ACCTGC	2 cut(s)	49, 224
AccB1I	GGYRCC	1 cut(s)	88
AccII	CGCG	1 cut(s)	347
AciI	CCGC	3 cut(s)	153, 231, 345
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	32, 506
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	1 cut(s)	315
AluI	AGCT	1 cut(s)	315
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	2 cut(s)	315, 435
AlwI	GGATC	1 cut(s)	470
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	269, 272, 305
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	513
BanI	GGYRCC	1 cut(s)	88
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	3 cut(s)	256, 284, 292
BciT130I	CCWGG	1 cut(s)	203
BcoDI	GTCTC	2 cut(s)	315, 435
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	3 cut(s)	270, 306, 466
BfuAI	ACCTGC	2 cut(s)	49, 224
BglI	GCCNNNNNGGC	1 cut(s)	203
BisI	GCNGC	5 cut(s)	153, 231, 270, 273, 306
BlsI	GCNGC	5 cut(s)	154, 232, 271, 274, 307
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	3 cut(s)	90, 142, 229
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	45, 374
BoxI	GACNNNNGTC	1 cut(s)	447
BpuEI	CTTGAG	2 cut(s)	116, 301
BsaWI	WCCGGW	2 cut(s)	175, 254
BseBI	CCWGG	1 cut(s)	203
BseGI	GGATG	2 cut(s)	212, 324
BseMII	CTCAG	2 cut(s)	399, 499
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	3 cut(s)	256, 284, 292
BsgI	GTGCAG	2 cut(s)	258, 279
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	206
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	176, 255
BsmAI	GTCTC	2 cut(s)	315, 435
BsmBI	CGTCTC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	493, 513
Bsp143I	GATC	3 cut(s)	34, 334, 462
BspACI	CCGC	3 cut(s)	153, 231, 345
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	2 cut(s)	400, 498
BspFNI	CGCG	1 cut(s)	347
BspHI	TCATGA	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	90, 142, 229
BspMAI	CTGCAG	3 cut(s)	274, 310, 470
BspMI	ACCTGC	2 cut(s)	49, 224
BspPI	GGATC	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	88
BssMI	GATC	3 cut(s)	34, 334, 462
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	371, 408, 485
BstF5I	GGATG	2 cut(s)	212, 324
BstFNI	CGCG	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	3 cut(s)	37, 337, 465
BstMAI	GTCTC	2 cut(s)	315, 435
BstMBI	GATC	3 cut(s)	34, 334, 462
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 203, 236, 257, 266
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	26
BstPAI	GACNNNNGTC	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	3 cut(s)	270, 306, 466
BstSLI	GKGCMC	1 cut(s)	513
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	3 cut(s)	256, 284, 292
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	212, 324
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
BveI	ACCTGC	2 cut(s)	49, 224
Cac8I	GCNNGC	1 cut(s)	157
CciI	TCATGA	1 cut(s)	108
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	72
CviAII	CATG	5 cut(s)	23, 109, 160, 459, 494
CviJI	RGCY	7 cut(s)	143, 152, 206, 230, 269, 305, 315
CviKI_1	RGCY	7 cut(s)	143, 152, 206, 230, 269, 305, 315
DdeI	CTNAG	3 cut(s)	371, 408, 485
DpnI	GATC	3 cut(s)	36, 336, 464
DpnII	GATC	3 cut(s)	34, 334, 462
DrdI	GACNNNNNNGTC	1 cut(s)	79
DseDI	GACNNNNNNGTC	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	5 cut(s)	26, 112, 163, 462, 497
FaiI	YATR	8 cut(s)	24, 110, 161, 225, 424, 460, 477, 495
FalI	AAGNNNNNCTT	1 cut(s)	498
FatI	CATG	5 cut(s)	22, 108, 159, 458, 493
Fnu4HI	GCNGC	5 cut(s)	153, 231, 270, 273, 306
FokI	GGATG	2 cut(s)	199, 311
Fsp4HI	GCNGC	5 cut(s)	153, 231, 270, 273, 306
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	5 cut(s)	153, 231, 270, 273, 306
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	2 cut(s)	176, 255
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	5 cut(s)	26, 112, 163, 462, 497
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	2 cut(s)	11, 64
HindII	GTYRAC	2 cut(s)	11, 64
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	2 cut(s)	176, 255
Hpy166II	GTNNAC	3 cut(s)	11, 50, 64
Hpy188I	TCNGA	3 cut(s)	339, 453, 488
Hpy188III	TCNNGA	4 cut(s)	109, 133, 318, 362
Hpy8I	GTNNAC	3 cut(s)	11, 50, 64
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	8 cut(s)	22, 58, 239, 260, 272, 308, 458, 468
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 203, 236, 257, 266
HpyF3I	CTNAG	3 cut(s)	371, 408, 485
Hsp92II	CATG	5 cut(s)	26, 112, 163, 462, 497
HspAI	GCGC	1 cut(s)	347
Kzo9I	GATC	3 cut(s)	34, 334, 462
LmnI	GCTCC	3 cut(s)	140, 227, 291
Lsp1109I	GCAGC	3 cut(s)	256, 284, 292
LweI	GCATC	2 cut(s)	45, 374
MaeI	CTAG	1 cut(s)	149
MalI	GATC	3 cut(s)	36, 336, 464
MboI	GATC	3 cut(s)	34, 334, 462
MboII	GAAGA	2 cut(s)	44, 176
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	2 cut(s)	493, 513
MluCI	AATT	1 cut(s)	501
MnlI	CCTC	3 cut(s)	227, 465, 494
Mph1103I	ATGCAT	1 cut(s)	24
MseI	TTAA	2 cut(s)	126, 480
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	176, 255
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	5 cut(s)	149, 203, 236, 257, 266
NdeII	GATC	3 cut(s)	34, 334, 462
NlaIII	CATG	5 cut(s)	26, 112, 163, 462, 497
NlaIV	GGNNCC	3 cut(s)	90, 142, 229
NsiI	ATGCAT	1 cut(s)	24
NspI	RCATGY	1 cut(s)	26
PagI	TCATGA	1 cut(s)	108
PaqCI	CACCTGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	5 cut(s)	154, 232, 271, 274, 307
PshAI	GACNNNNGTC	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	3 cut(s)	90, 142, 229
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	3 cut(s)	274, 310, 470
PsuI	RGATCY	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	126, 480
SatI	GCNGC	5 cut(s)	153, 231, 270, 273, 306
Sau3AI	GATC	3 cut(s)	34, 334, 462
Sau96I	GGNCC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	2 cut(s)	493, 513
SetI	ASST	6 cut(s)	63, 204, 238, 317, 422, 486
SfaNI	GCATC	2 cut(s)	45, 374
SfcI	CTRYAG	3 cut(s)	270, 306, 466
SinI	GGWCC	1 cut(s)	72
SmlI	CTYRAG	2 cut(s)	131, 316
SmoI	CTYRAG	2 cut(s)	131, 316
Sse9I	AATT	1 cut(s)	501
SsiI	CCGC	3 cut(s)	153, 231, 345
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	76
TasI	AATT	1 cut(s)	501
TauI	GCSGC	2 cut(s)	155, 233
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	126, 480
Tru9I	TTAA	2 cut(s)	126, 480
TscAI	CASTG	1 cut(s)	267
TseI	GCWGC	3 cut(s)	269, 272, 305
TspDTI	ATGAA	4 cut(s)	97, 125, 201, 510
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	72
XceI	RCATGY	1 cut(s)	26
XspI	CTAG	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.