MD11G1207900.v1.1

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0028902
Physical Location & Seq
Reverse (-)
30270357 .. 30270941
585 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1207900.v1.1.491

Sequence Viewer

Length: 585 bp
ATGCCTCGTTCACGGCGTGACTACTGCAGCTGCCTTGTTGTCATCCTCAACATCCTCACCATCCTCGCCATCCTCGCCTTCCTCGGGGTAATAGCCTTTTCCTTCTACTCCTTAATCTGGTTATGTGTCCTTCCCAATGAGCCCAAAATCACCATCACTGACGCATCTCTCACCCAATTTGATTTCGCTGCCGGCAGAAACAACATTCTCAACTACAACCTTGCACTCAACTTTACCATCAGAAATTCCAACAAAAGGGTCGGCATAGACTACCGTGGCATCCAAGTCATTGGCAAATACAGAAACAAGAAGTTTTTTGTTGCAAGTTTGAGTTCGACACCTTTTTACCGAGACCACAAGAACACCACCGTTGTGCCTGTAGTTCTTCAAGGGCAGCAGTGGGTTAAGTTTCGAAAACATGACGTTTCTAAGTTTAACTTGGAGACTGCGGCCGGTGTTTACAACATTCGTGTAGAGTTTCGTCTTCAGATCAGATACAAACACGTCAGGATATTGAAGAAAATTACGGACTCACCGAAGATCTATTGCAAGCAAGTGAAGGTTCCATTGAGTGGTTATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

195

Amino Acids

22.39

Weight (kDa)

10.11

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 78 - 171 2.1e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028902)

Species Orthologous Gene IDs
malus_domestica MD11G1207900.v1.1
pyrus_communis pycom11g18110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 572
AciI CCGC 1 cut(s) 449
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 1 cut(s) 244
AcuI CTGAAG 1 cut(s) 470
AdeI CACNNNGTG 1 cut(s) 17
AfiI CCNNNNNNNGG 4 cut(s) 84, 117, 255, 572
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 2 cut(s) 389, 517
AjiI CACGTC 1 cut(s) 505
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw26I GTCTC 2 cut(s) 345, 437
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 1 cut(s) 450
ApeKI GCWGC 4 cut(s) 27, 30, 188, 394
ApoI RAATTY 1 cut(s) 244
AsuHPI GGTGA 4 cut(s) 49, 142, 163, 525
AsuII TTCGAA 1 cut(s) 412
AvaI CYCGRG 1 cut(s) 83
BanII GRGCYC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 476
BbvI GCAGC 4 cut(s) 17, 39, 175, 406
BccI CCATC 4 cut(s) 68, 77, 161, 245
BceAI ACGGC 1 cut(s) 29
BcoDI GTCTC 2 cut(s) 345, 437
BfmI CTRYAG 2 cut(s) 25, 378
BglII AGATCT 1 cut(s) 540
BisI GCNGC 5 cut(s) 28, 31, 189, 395, 450
BlsI GCNGC 5 cut(s) 29, 32, 190, 396, 451
BmeT110I CYCGRG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 505
BmiI GGNNCC 1 cut(s) 564
BmsI GCATC 2 cut(s) 173, 288
BpiI GAAGAC 1 cut(s) 476
Bpu14I TTCGAA 1 cut(s) 412
BsaI GGTCTC 1 cut(s) 345
BsaJI CCNNGG 2 cut(s) 82, 274
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 117, 255, 572
Bse118I RCCGGY 2 cut(s) 191, 452
BseDI CCNNGG 2 cut(s) 82, 274
BseGI GGATG 5 cut(s) 42, 51, 60, 69, 279
BseLI CCNNNNNNNGG 4 cut(s) 84, 117, 255, 572
BseX3I CGGCCG 1 cut(s) 450
BseXI GCAGC 4 cut(s) 17, 39, 175, 406
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 1 cut(s) 452
BsiEI CGRYCG 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 2 cut(s) 192, 453
BslI CCNNNNNNNGG 4 cut(s) 84, 117, 255, 572
BsmAI GTCTC 2 cut(s) 345, 437
BsnI GGCC 1 cut(s) 452
Bso31I GGTCTC 1 cut(s) 345
BsoBI CYCGRG 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 2 cut(s) 489, 540
BspACI CCGC 1 cut(s) 449
BspANI GGCC 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 564
BspMAI CTGCAG 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 412
BspTNI GGTCTC 1 cut(s) 345
BsrFI RCCGGY 2 cut(s) 191, 452
BssAI RCCGGY 2 cut(s) 191, 452
BssECI CCNNGG 2 cut(s) 82, 274
BssMI GATC 2 cut(s) 489, 540
Bst4CI ACNGT 2 cut(s) 275, 370
BstBI TTCGAA 1 cut(s) 412
BstC8I GCNNGC 2 cut(s) 193, 551
BstDEI CTNAG 1 cut(s) 429
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 5 cut(s) 42, 51, 60, 69, 279
BstKTI GATC 2 cut(s) 492, 543
BstMAI GTCTC 2 cut(s) 345, 437
BstMBI GATC 2 cut(s) 489, 540
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstSFI CTRYAG 2 cut(s) 25, 378
BstV1I GCAGC 4 cut(s) 17, 39, 175, 406
BstV2I GAAGAC 1 cut(s) 476
BstX2I RGATCY 1 cut(s) 540
BstXI CCANNNNNNTGG 1 cut(s) 290
BstYI RGATCY 1 cut(s) 540
BstZI CGGCCG 1 cut(s) 450
BsuRI GGCC 1 cut(s) 452
BtgI CCRYGG 1 cut(s) 274
BtrI CACGTC 1 cut(s) 505
BtsCI GGATG 5 cut(s) 42, 51, 60, 69, 279
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 2 cut(s) 156, 404
Cac8I GCNNGC 2 cut(s) 193, 551
Cfr10I RCCGGY 2 cut(s) 191, 452
CseI GACGC 1 cut(s) 170
CviAII CATG 1 cut(s) 419
CviJI RGCY 4 cut(s) 30, 95, 142, 452
CviKI_1 RGCY 4 cut(s) 30, 95, 142, 452
DdeI CTNAG 1 cut(s) 429
DpnI GATC 2 cut(s) 491, 542
DpnII GATC 2 cut(s) 489, 540
DraIII CACNNNGTG 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 450
EagI CGGCCG 1 cut(s) 450
EclXI CGGCCG 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 345
Eco52I CGGCCG 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 144
FaeI CATG 1 cut(s) 422
FaiI YATR 3 cut(s) 124, 266, 420
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FatI CATG 1 cut(s) 418
Fnu4HI GCNGC 5 cut(s) 28, 31, 189, 395, 450
FokI GGATG 5 cut(s) 29, 38, 47, 56, 266
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 5 cut(s) 28, 31, 189, 395, 450
GluI GCNGC 5 cut(s) 28, 31, 189, 395, 450
HaeIII GGCC 1 cut(s) 452
HapII CCGG 2 cut(s) 192, 453
HgaI GACGC 1 cut(s) 170
Hin1II CATG 1 cut(s) 422
HinfI GANTC 1 cut(s) 530
HpaII CCGG 2 cut(s) 192, 453
HphI GGTGA 4 cut(s) 49, 142, 163, 525
Hpy166II GTNNAC 2 cut(s) 11, 460
Hpy188I TCNGA 3 cut(s) 242, 489, 494
Hpy188III TCNNGA 1 cut(s) 508
Hpy8I GTNNAC 2 cut(s) 11, 460
HpyAV CCTTC 4 cut(s) 88, 112, 140, 553
HpyCH4III ACNGT 2 cut(s) 275, 370
HpyCH4IV ACGT 2 cut(s) 423, 504
HpyCH4V TGCA 4 cut(s) 27, 224, 323, 549
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 2 cut(s) 423, 504
Hsp92II CATG 1 cut(s) 422
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Kzo9I GATC 2 cut(s) 489, 540
LpnPI CCDG 5 cut(s) 103, 205, 390, 466, 493
Lsp1109I GCAGC 4 cut(s) 17, 39, 175, 406
LweI GCATC 2 cut(s) 173, 288
MaeII ACGT 2 cut(s) 423, 504
MaeIII GTNAC 1 cut(s) 17
MalI GATC 2 cut(s) 491, 542
MboI GATC 2 cut(s) 489, 540
MboII GAAGA 4 cut(s) 377, 476, 529, 550
MflI RGATCY 1 cut(s) 540
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 3 cut(s) 176, 244, 522
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 6 cut(s) 15, 56, 65, 74, 83, 92
MroNI GCCGGC 1 cut(s) 191
MseI TTAA 4 cut(s) 113, 405, 435, 583
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 2 cut(s) 192, 453
MwoI GCNNNNNNNGC 1 cut(s) 74
NaeI GCCGGC 1 cut(s) 193
NdeII GATC 2 cut(s) 489, 540
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 1 cut(s) 564
NmuCI GTSAC 1 cut(s) 17
NspV TTCGAA 1 cut(s) 412
OliI CACNNNNGTG 1 cut(s) 371
PcsI WCGNNNNNNNCGW 2 cut(s) 13, 533
PdiI GCCGGC 1 cut(s) 193
PflMI CCANNNNNTGG 1 cut(s) 572
PkrI GCNGC 5 cut(s) 29, 32, 190, 396, 451
PleI GAGTC 1 cut(s) 524
PpsI GAGTC 1 cut(s) 524
PspN4I GGNNCC 1 cut(s) 564
PstI CTGCAG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 540
PvuII CAGCTG 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 4 cut(s) 113, 405, 435, 583
SatI GCNGC 5 cut(s) 28, 31, 189, 395, 450
Sau3AI GATC 2 cut(s) 489, 540
SchI GAGTC 1 cut(s) 524
SduI GDGCHC 1 cut(s) 144
SetI ASST 6 cut(s) 32, 222, 343, 426, 507, 564
SfaNI GCATC 2 cut(s) 173, 288
SfcI CTRYAG 2 cut(s) 25, 378
SfuI TTCGAA 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 3 cut(s) 176, 244, 522
SsiI CCGC 1 cut(s) 449
TaaI ACNGT 2 cut(s) 275, 370
TaiI ACGT 2 cut(s) 426, 507
TaqI TCGA 2 cut(s) 335, 412
TasI AATT 3 cut(s) 176, 244, 522
TauI GCSGC 1 cut(s) 452
Tru1I TTAA 4 cut(s) 113, 405, 435, 583
Tru9I TTAA 4 cut(s) 113, 405, 435, 583
TscAI CASTG 2 cut(s) 163, 404
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 4 cut(s) 27, 30, 188, 394
Tsp45I GTSAC 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 542
TspRI CASTG 2 cut(s) 163, 404
Van91I CCANNNNNTGG 1 cut(s) 572
XapI RAATTY 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.