MD11G1253500.v1.1

Protein CUP-SHAPED COTYLEDON 2-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
36562536 .. 36564863
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1253500.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGGACATCATGAGCTTCTCCACCCACTTTGATCACAACACCCACCTGCCACCCGGCTTCCGTTTCCACCCCACCGATGAGGAGCTCATCACCTACTACCTCCTCAAGAAGGTCCTCGACAGCAGCTTCACCGGCCGTGCCATTGCTGAAGTCGACCTCAACAAGTGTGAGCCTTGGGAGCTCCCTGACAAGGCAAAGATGGGGGAGAAAGAGTGGTACTTTTTCAGCCTGCGTGACCGGAAATACCCGACGGGGCTCCGAACCAACAGGGCAACTGAAGCCGGGTACTGGAAAGCCACCGGAAAGGACAGGGAGATTTACAGCTCCAAGACTTGCGCGCTCGTTGGGATGAAGAAGACTTTGGTTTTTTACCGCGGTAGAGCTCCCAAGGGTGAAAAATCCAACTGGGTCATGCATGAGTACCGTCTTGAAGGCAAATTTGCCTACCACTATCTCTCCCGGAGCTCCAAGGACGAGTGGGTCATTTCCCGGGTTTTCCAGAAGAGTAGCGGATCAGCCGCCAACGGACCCGGATCCAAAAAGACTCGGATGGGCAACGGCTCCACCAGCAGCGTCTCTCTCTACCCAGAACCCAGCTCCCCCTCCTCCGTTTCTCTCCCGCCCCTCCTCGACTCCTCCCCTTACCAACCCATCTCCGCCGCCGGCGACGGCTGCTCTTACGACAGTCCAATCCCCAGGGAGCACGTGTCCTGTTTCTCCACCAACCCCAGCAATAATGGCTTCAACCTCCCAGCCTCATGCTTCGACCTGGCTCACCCTCCTCCGCCCCAGCCGCCGAACTTTGGAGGCGTCTCGGCCTTCCCGAGCCTCCGGTCTCTGCAGGAGAATCTCCAGCTGCCCTTCTTCTTCTCCCCAATGCCGGCTCATCCTCCTGTCCACGTTGGCAGCTCTGTTGCTGGCGGCGGATCCTCCGTCGATTTCACTGGGAACTGGCCTCCGGTGTCCGAGGAAGCCAGGGCAGTTGGCCCCACGGAGCTTGATTGCATGTGGAACTACTACAAGACCGAGTGTCTTTGA

Protein Analysis

346

Amino Acids

38.29

Weight (kDa)

7.62

Isoelectric Point (pI)

55.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 143 9.9e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023595)

Species Orthologous Gene IDs
malus_domestica MD11G1253500.v1.1
prunus_persica Prupe.4G175800_v2.0.a1
pyrus_communis pycom11g22460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 54
AasI GACNNNNNNGTC 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 153
AccII CGCG 2 cut(s) 338, 375
AclWI GGATC 5 cut(s) 520, 528, 541, 921, 934
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 2 cut(s) 168, 297
AcvI CACGTG 1 cut(s) 706
AcyI GRCGYC 1 cut(s) 810
AfaI GTAC 3 cut(s) 218, 287, 422
AfiI CCNNNNNNNGG 5 cut(s) 109, 190, 288, 803, 880
AflIII ACRYGT 1 cut(s) 705
AgsI TTSAA 2 cut(s) 431, 745
AhdI GACNNNNNGTC 1 cut(s) 1029
AjnI CCWGG 3 cut(s) 695, 768, 974
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
Alw21I GWGCWC 5 cut(s) 87, 183, 385, 467, 705
Alw26I GTCTC 3 cut(s) 580, 817, 840
AlwI GGATC 5 cut(s) 520, 528, 541, 921, 934
Ama87I CYCGRG 2 cut(s) 489, 823
AoxI GGCC 4 cut(s) 133, 816, 953, 985
ApeKI GCWGC 5 cut(s) 123, 570, 672, 856, 906
ApoI RAATTY 1 cut(s) 437
AspLEI GCGC 2 cut(s) 338, 340
AspS9I GGNCC 3 cut(s) 112, 527, 986
AsuC2I CCSGG 6 cut(s) 54, 283, 460, 490, 491, 531
AsuHPI GGTGA 4 cut(s) 82, 121, 404, 767
AvaI CYCGRG 2 cut(s) 489, 823
AvaII GGWCC 2 cut(s) 112, 527
BamHI GGATCC 2 cut(s) 533, 926
BanII GRGCYC 5 cut(s) 87, 183, 258, 385, 467
BbrPI CACGTG 1 cut(s) 706
BbsI GAAGAC 1 cut(s) 362
Bbv12I GWGCWC 5 cut(s) 87, 183, 385, 467, 705
BbvI GCAGC 5 cut(s) 135, 582, 659, 843, 918
BccI CCATC 3 cut(s) 193, 544, 659
BceAI ACGGC 3 cut(s) 120, 574, 685
BciT130I CCWGG 3 cut(s) 697, 770, 976
BclI TGATCA 1 cut(s) 31
BcnI CCSGG 6 cut(s) 54, 283, 460, 490, 491, 531
BcoDI GTCTC 3 cut(s) 580, 817, 840
BfmI CTRYAG 1 cut(s) 839
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 9 cut(s) 124, 519, 571, 660, 673, 794, 857, 907, 922
BlsI GCNGC 9 cut(s) 125, 520, 572, 661, 674, 795, 858, 908, 923
Bme1390I CCNGG 9 cut(s) 54, 283, 460, 490, 491, 531, 697, 770, 976
Bme18I GGWCC 2 cut(s) 112, 527
BmeRI GACNNNNNGTC 1 cut(s) 1029
BmeT110I CYCGRG 2 cut(s) 489, 823
BmgT120I GGNCC 3 cut(s) 112, 527, 986
BmiI GGNNCC 6 cut(s) 257, 529, 535, 562, 928, 988
BmrFI CCNGG 9 cut(s) 54, 283, 460, 490, 491, 531, 697, 770, 976
BmrI ACTGGG 2 cut(s) 415, 954
BmuI ACTGGG 2 cut(s) 415, 954
BpiI GAAGAC 1 cut(s) 362
BpmI CTGGAG 1 cut(s) 836
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 6 cut(s) 54, 283, 460, 490, 491, 531
BsaAI YACGTR 1 cut(s) 706
BsaHI GRCGYC 1 cut(s) 810
BsaI GGTCTC 1 cut(s) 840
BsaWI WCCGGW 4 cut(s) 237, 299, 831, 958
BsaXI ACNNNNNCTCC 6 cut(s) 197, 227, 440, 470, 692, 722
Bsc4I CCNNNNNNNGG 5 cut(s) 109, 190, 288, 803, 880
Bse118I RCCGGY 3 cut(s) 131, 662, 880
Bse1I ACTGG 4 cut(s) 293, 410, 949, 956
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 3 cut(s) 697, 770, 976
BseGI GGATG 3 cut(s) 354, 555, 886
BseLI CCNNNNNNNGG 5 cut(s) 109, 190, 288, 803, 880
BseMI GCAATG 1 cut(s) 141
BseNI ACTGG 4 cut(s) 293, 410, 949, 956
BsePI GCGCGC 1 cut(s) 336
BseRI GAGGAG 6 cut(s) 92, 95, 595, 617, 625, 771
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 5 cut(s) 135, 582, 659, 843, 918
BseYI CCCAGC 4 cut(s) 593, 728, 751, 789
Bsh1236I CGCG 2 cut(s) 338, 375
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 4 cut(s) 135, 818, 955, 987
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 5 cut(s) 87, 183, 385, 467, 705
BsiHKCI CYCGRG 2 cut(s) 489, 823
BslI CCNNNNNNNGG 5 cut(s) 109, 190, 288, 803, 880
BsmAI GTCTC 3 cut(s) 580, 817, 840
BsmBI CGTCTC 2 cut(s) 580, 817
BsnI GGCC 4 cut(s) 135, 818, 955, 987
Bso31I GGTCTC 1 cut(s) 840
BsoBI CYCGRG 2 cut(s) 489, 823
Bsp1286I GDGCHC 6 cut(s) 87, 183, 258, 385, 467, 705
Bsp143I GATC 4 cut(s) 31, 512, 533, 926
BspANI GGCC 4 cut(s) 135, 818, 955, 987
BspFNI CGCG 2 cut(s) 338, 375
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 6 cut(s) 257, 529, 535, 562, 928, 988
BspMAI CTGCAG 1 cut(s) 843
BspMI ACCTGC 1 cut(s) 54
BspPI GGATC 5 cut(s) 520, 528, 541, 921, 934
BspTNI GGTCTC 1 cut(s) 840
BsrDI GCAATG 1 cut(s) 141
BsrFI RCCGGY 3 cut(s) 131, 662, 880
BsrI ACTGG 4 cut(s) 293, 410, 949, 956
BssAI RCCGGY 3 cut(s) 131, 662, 880
BssHII GCGCGC 1 cut(s) 336
BssMI GATC 4 cut(s) 31, 512, 533, 926
BssNI GRCGYC 1 cut(s) 810
BssT1I CCWWGG 3 cut(s) 173, 387, 468
Bst2UI CCWGG 3 cut(s) 697, 770, 976
Bst4CI ACNGT 2 cut(s) 425, 686
Bst6I CTCTTC 1 cut(s) 497
BstACI GRCGYC 1 cut(s) 810
BstBAI YACGTR 1 cut(s) 706
BstC8I GCNNGC 5 cut(s) 230, 338, 664, 882, 919
BstDSI CCRYGG 2 cut(s) 373, 990
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 3 cut(s) 354, 555, 886
BstFNI CGCG 2 cut(s) 338, 375
BstHHI GCGC 2 cut(s) 338, 340
BstKTI GATC 4 cut(s) 34, 515, 536, 929
BstMAI GTCTC 3 cut(s) 580, 817, 840
BstMBI GATC 4 cut(s) 31, 512, 533, 926
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 7 cut(s) 132, 178, 278, 567, 672, 738, 793
BstNI CCWGG 3 cut(s) 697, 770, 976
BstNSI RCATGY 1 cut(s) 1009
BstSCI CCNGG 9 cut(s) 52, 281, 458, 488, 489, 529, 695, 768, 974
BstSFI CTRYAG 1 cut(s) 839
BstUI CGCG 2 cut(s) 338, 375
BstV1I GCAGC 5 cut(s) 135, 582, 659, 843, 918
BstV2I GAAGAC 1 cut(s) 362
BstX2I RGATCY 2 cut(s) 533, 926
BstYI RGATCY 2 cut(s) 533, 926
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 4 cut(s) 135, 818, 955, 987
BtgI CCRYGG 2 cut(s) 373, 990
BtsCI GGATG 3 cut(s) 354, 555, 886
BtsIMutI CAGTG 1 cut(s) 942
BveI ACCTGC 1 cut(s) 54
Cac8I GCNNGC 5 cut(s) 230, 338, 664, 882, 919
CciI TCATGA 1 cut(s) 9
CfoI GCGC 2 cut(s) 338, 340
Cfr10I RCCGGY 3 cut(s) 131, 662, 880
Cfr13I GGNCC 3 cut(s) 112, 527, 986
Cfr42I CCGCGG 1 cut(s) 376
Cfr9I CCCGGG 1 cut(s) 489
CseI GACGC 2 cut(s) 562, 799
Csp6I GTAC 3 cut(s) 217, 286, 421
CspCI CAANNNNNGTGG 4 cut(s) 10, 45, 979, 1014
CviAII CATG 5 cut(s) 10, 412, 416, 759, 1006
CviQI GTAC 3 cut(s) 217, 286, 421
DpnI GATC 4 cut(s) 33, 514, 535, 928
DpnII GATC 4 cut(s) 31, 512, 533, 926
DrdI GACNNNNNNGTC 1 cut(s) 479
DriI GACNNNNNGTC 1 cut(s) 1029
DseDI GACNNNNNNGTC 1 cut(s) 479
EaeI YGGCCR 1 cut(s) 133
EagI CGGCCG 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 497
Eam1105I GACNNNNNGTC 1 cut(s) 1029
EarI CTCTTC 1 cut(s) 497
EciI GGCGGA 3 cut(s) 646, 774, 939
Ecl136II GAGCTC 4 cut(s) 85, 181, 383, 465
EclXI CGGCCG 1 cut(s) 133
Eco130I CCWWGG 3 cut(s) 173, 387, 468
Eco24I GRGCYC 5 cut(s) 87, 183, 258, 385, 467
Eco31I GGTCTC 1 cut(s) 840
Eco47I GGWCC 2 cut(s) 112, 527
Eco52I CGGCCG 1 cut(s) 133
Eco53kI GAGCTC 4 cut(s) 85, 181, 383, 465
Eco57I CTGAAG 2 cut(s) 168, 297
Eco72I CACGTG 1 cut(s) 706
Eco88I CYCGRG 2 cut(s) 489, 823
EcoICRI GAGCTC 4 cut(s) 85, 181, 383, 465
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 695, 768, 974
EcoT14I CCWWGG 3 cut(s) 173, 387, 468
EcoT22I ATGCAT 1 cut(s) 417
EcoT38I GRGCYC 5 cut(s) 87, 183, 258, 385, 467
ErhI CCWWGG 3 cut(s) 173, 387, 468
Esp3I CGTCTC 2 cut(s) 580, 817
FaeI CATG 5 cut(s) 13, 415, 419, 762, 1009
FaiI YATR 5 cut(s) 11, 413, 417, 760, 1007
FatI CATG 5 cut(s) 9, 411, 415, 758, 1005
FauI CCCGC 1 cut(s) 627
FbaI TGATCA 1 cut(s) 31
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 9 cut(s) 124, 519, 571, 660, 673, 794, 857, 907, 922
FokI GGATG 3 cut(s) 361, 562, 873
FriOI GRGCYC 5 cut(s) 87, 183, 258, 385, 467
Fsp4HI GCNGC 9 cut(s) 124, 519, 571, 660, 673, 794, 857, 907, 922
GlaI GCGC 2 cut(s) 337, 339
GluI GCNGC 9 cut(s) 124, 519, 571, 660, 673, 794, 857, 907, 922
GsaI CCCAGC 4 cut(s) 597, 732, 755, 793
GsuI CTGGAG 1 cut(s) 836
HaeIII GGCC 4 cut(s) 135, 818, 955, 987
HgaI GACGC 2 cut(s) 562, 799
HhaI GCGC 2 cut(s) 338, 340
Hin1I GRCGYC 1 cut(s) 810
Hin1II CATG 5 cut(s) 13, 415, 419, 762, 1009
Hin6I GCGC 2 cut(s) 336, 338
HinP1I GCGC 2 cut(s) 336, 338
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 3 cut(s) 544, 632, 847
HphI GGTGA 4 cut(s) 82, 121, 404, 767
Hpy166II GTNNAC 2 cut(s) 154, 898
Hpy188I TCNGA 3 cut(s) 260, 549, 967
Hpy188III TCNNGA 5 cut(s) 10, 106, 428, 499, 823
Hpy8I GTNNAC 2 cut(s) 154, 898
Hpy99I CGWCG 3 cut(s) 253, 671, 938
HpyAV CCTTC 4 cut(s) 103, 425, 829, 871
HpyCH4III ACNGT 2 cut(s) 425, 686
HpyCH4IV ACGT 2 cut(s) 705, 900
HpyCH4V TGCA 3 cut(s) 415, 841, 1005
HpyF10VI GCNNNNNNNGC 7 cut(s) 132, 178, 278, 567, 672, 738, 793
HpySE526I ACGT 2 cut(s) 705, 900
Hsp92I GRCGYC 1 cut(s) 810
Hsp92II CATG 5 cut(s) 13, 415, 419, 762, 1009
HspAI GCGC 2 cut(s) 336, 338
KroI GCCGGC 2 cut(s) 662, 880
KroNI GCCGGC 2 cut(s) 664, 882
Ksp22I TGATCA 1 cut(s) 31
KspI CCGCGG 1 cut(s) 376
Kzo9I GATC 4 cut(s) 31, 512, 533, 926
Lsp1109I GCAGC 5 cut(s) 135, 582, 659, 843, 918
MaeII ACGT 2 cut(s) 705, 900
MaeIII GTNAC 1 cut(s) 233
MalI GATC 4 cut(s) 33, 514, 535, 928
MboI GATC 4 cut(s) 31, 512, 533, 926
MboII GAAGA 5 cut(s) 364, 367, 514, 856, 859
MflI RGATCY 2 cut(s) 533, 926
MhlI GDGCHC 6 cut(s) 87, 183, 258, 385, 467, 705
MluCI AATT 1 cut(s) 437
MlyI GAGTC 2 cut(s) 538, 626
MmeI TCCRAC 1 cut(s) 426
Mph1103I ATGCAT 1 cut(s) 417
MreI CGCCGGCG 1 cut(s) 662
MroNI GCCGGC 2 cut(s) 662, 880
MspA1I CMGCKG 2 cut(s) 375, 856
MspR9I CCNGG 9 cut(s) 54, 283, 460, 490, 491, 531, 697, 770, 976
MvaI CCWGG 3 cut(s) 697, 770, 976
MvnI CGCG 2 cut(s) 338, 375
MwoI GCNNNNNNNGC 7 cut(s) 132, 178, 278, 567, 672, 738, 793
NaeI GCCGGC 2 cut(s) 664, 882
NciI CCSGG 6 cut(s) 54, 283, 460, 490, 491, 531
NdeII GATC 4 cut(s) 31, 512, 533, 926
NgoMIV GCCGGC 2 cut(s) 662, 880
NlaIII CATG 5 cut(s) 13, 415, 419, 762, 1009
NlaIV GGNNCC 6 cut(s) 257, 529, 535, 562, 928, 988
NmeAIII GCCGAG 1 cut(s) 794
NmuCI GTSAC 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 1 cut(s) 1009
PagI TCATGA 1 cut(s) 9
PaqCI CACCTGC 1 cut(s) 54
PasI CCCWGGG 1 cut(s) 696
PauI GCGCGC 1 cut(s) 336
PcsI WCGNNNNNNNCGW 1 cut(s) 821
PdiI GCCGGC 2 cut(s) 664, 882
PfeI GAWTC 1 cut(s) 847
PfoI TCCNGGA 1 cut(s) 458
PkrI GCNGC 9 cut(s) 125, 520, 572, 661, 674, 795, 858, 908, 923
PleI GAGTC 2 cut(s) 538, 626
PmaCI CACGTG 1 cut(s) 706
PmlI CACGTG 1 cut(s) 706
PpsI GAGTC 2 cut(s) 538, 626
Ppu21I YACGTR 1 cut(s) 706
PpuMI RGGWCCY 1 cut(s) 112
Psp124BI GAGCTC 4 cut(s) 87, 183, 385, 467
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 3 cut(s) 695, 768, 974
PspCI CACGTG 1 cut(s) 706
PspFI CCCAGC 4 cut(s) 593, 728, 751, 789
PspGI CCWGG 3 cut(s) 695, 768, 974
PspN4I GGNNCC 6 cut(s) 257, 529, 535, 562, 928, 988
PspPI GGNCC 3 cut(s) 112, 527, 986
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 843
PsuI RGATCY 2 cut(s) 533, 926
PteI GCGCGC 1 cut(s) 336
PvuII CAGCTG 1 cut(s) 856
RsaI GTAC 3 cut(s) 218, 287, 422
RsaNI GTAC 3 cut(s) 217, 286, 421
SacI GAGCTC 4 cut(s) 87, 183, 385, 467
SacII CCGCGG 1 cut(s) 376
SalI GTCGAC 1 cut(s) 152
SatI GCNGC 9 cut(s) 124, 519, 571, 660, 673, 794, 857, 907, 922
Sau3AI GATC 4 cut(s) 31, 512, 533, 926
Sau96I GGNCC 3 cut(s) 112, 527, 986
SchI GAGTC 2 cut(s) 538, 626
ScrFI CCNGG 9 cut(s) 54, 283, 460, 490, 491, 531, 697, 770, 976
SduI GDGCHC 6 cut(s) 87, 183, 258, 385, 467, 705
SfcI CTRYAG 1 cut(s) 839
Sfr303I CCGCGG 1 cut(s) 376
SgrAI CRCCGGYG 1 cut(s) 662
SgrBI CCGCGG 1 cut(s) 376
SinI GGWCC 2 cut(s) 112, 527
SmaI CCCGGG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 1 cut(s) 437
SstI GAGCTC 4 cut(s) 87, 183, 385, 467
StyD4I CCNGG 9 cut(s) 52, 281, 458, 488, 489, 529, 695, 768, 974
StyI CCWWGG 3 cut(s) 173, 387, 468
TaaI ACNGT 2 cut(s) 425, 686
TaiI ACGT 2 cut(s) 708, 903
TaqI TCGA 5 cut(s) 117, 153, 630, 765, 936
TasI AATT 1 cut(s) 437
TauI GCSGC 4 cut(s) 521, 662, 796, 924
TfiI GAWTC 1 cut(s) 847
TscAI CASTG 1 cut(s) 949
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 5 cut(s) 123, 570, 672, 856, 906
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 365
TspGWI ACGGA 5 cut(s) 50, 540, 598, 922, 1007
TspMI CCCGGG 1 cut(s) 489
TspRI CASTG 1 cut(s) 949
VpaK11BI GGWCC 2 cut(s) 112, 527
XagI CCTNNNNNAGG 1 cut(s) 107
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 1009
XmaI CCCGGG 1 cut(s) 489
XmiI GTMKAC 1 cut(s) 153
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.