Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0028904

Physical Location & Seq

Genomic Coordinates Forward (+)

42664212 .. 42666043

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1314200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCGTCTCCCAACTCTAATTCCTCGTCCAAGTGCGGCACTCTCGACGCCATCAACTCCACCTCTTTCGATCCCGACCAGTACATGCATCTCCTTGTACACAGGTCAAACTTGGAAGGGCTTCTACAGAGACACGTTGAAATGGCTGCTGAGATAAAGAATCTTGATACTGACTTACAAATAATGAAAAGTAATATTGTGGGCATGGAGGCAAACATGGAACAGCTCCTTGAGAAGATAATGTCTGTGCGATCTAGAAGTGCTGGGGTTAACACTCGTCTTTTTGAGAAGAGGGAACACGCAACCTTCTTCGTAAAATTCTGGTTGTTAGCAATATTTGTTGTGGCATCAACTGATCAGACGAATATCGATCGACTTCTTCCCTTCATGTTGGGAATTACCATTGCCATGTTCTTTACTGTGCTTGCCATCTTTATCATCGTATGCCAATATTCATGTCCCACTGTATTCTTGCTGATTCCGCTTGCTTGGCTTAAAGTCTGTTATCGGGGTTATTTTCTTGCATCGTCTCGAGAGTTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000938 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0006810 GO:0006914 GO:0007034 GO:0007041 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010051 GO:0010305 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0031410 GO:0031982 GO:0032456 GO:0032501 GO:0032502 GO:0032991 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055037 GO:0061919 GO:0097708 GO:0099023 GO:1990745

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps51

Protein Analysis

182

Amino Acids

20.55

Weight (kDa)

6.89

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VPS51_Exo84_N	PF08700	18 - 60	5.9e-06	Vps51/EXO84/COG1 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028904)

Species	Orthologous Gene IDs
malus_domestica	MD11G1314200.v1.1
pyrus_communis	pycom11g27430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	36, 482
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	2 cut(s)	83, 99
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	140
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	3 cut(s)	12, 124, 534
AlwI	GGATC	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	531
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	120
AvaI	CYCGRG	1 cut(s)	531
BarI	GAAGNNNNNNTAC	2 cut(s)	108, 140
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	59, 437
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	3 cut(s)	12, 124, 534
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	37, 147
BlsI	GCNGC	2 cut(s)	38, 148
BmeT110I	CYCGRG	1 cut(s)	531
BmsI	GCATC	3 cut(s)	97, 356, 533
BpuEI	CTTGAG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	402
BseCI	ATCGAT	1 cut(s)	369
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	133
BseYI	CCCAGC	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	373
BshVI	ATCGAT	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	531
BslFI	GGGAC	1 cut(s)	444
BsmAI	GTCTC	3 cut(s)	12, 124, 534
BsmBI	CGTCTC	2 cut(s)	12, 534
BsmFI	GGGAC	1 cut(s)	444
BsoBI	CYCGRG	1 cut(s)	531
Bsp1407I	TGTACA	1 cut(s)	97
Bsp143I	GATC	4 cut(s)	70, 251, 355, 370
BspACI	CCGC	2 cut(s)	36, 482
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	369
BspPI	GGATC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	402
BsrGI	TGTACA	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	79
BssMI	GATC	4 cut(s)	70, 251, 355, 370
BssNI	GRCGYC	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	421, 466
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	426, 486
BstDEI	CTNAG	1 cut(s)	150
BstKTI	GATC	4 cut(s)	73, 254, 358, 373
BstMAI	GTCTC	3 cut(s)	12, 124, 534
BstMBI	GATC	4 cut(s)	70, 251, 355, 370
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	481, 490
BstNSI	RCATGY	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	133
Bsu15I	ATCGAT	1 cut(s)	369
BsuTUI	ATCGAT	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	2 cut(s)	426, 486
ClaI	ATCGAT	1 cut(s)	369
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	82, 98
CviAII	CATG	6 cut(s)	85, 205, 217, 388, 409, 456
CviJI	RGCY	4 cut(s)	121, 146, 226, 493
CviKI_1	RGCY	4 cut(s)	121, 146, 226, 493
CviQI	GTAC	2 cut(s)	82, 98
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	4 cut(s)	72, 253, 357, 372
DpnII	GATC	4 cut(s)	70, 251, 355, 370
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	531
EcoT22I	ATGCAT	1 cut(s)	90
Esp3I	CGTCTC	2 cut(s)	12, 534
FaeI	CATG	6 cut(s)	88, 208, 220, 391, 412, 459
FaiI	YATR	7 cut(s)	86, 206, 218, 389, 410, 445, 457
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	6 cut(s)	84, 204, 216, 387, 408, 455
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	37, 147
Fsp4HI	GCNGC	2 cut(s)	37, 147
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	2 cut(s)	37, 147
GsaI	CCCAGC	1 cut(s)	267
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	6 cut(s)	88, 208, 220, 391, 412, 459
HincII	GTYRAC	2 cut(s)	271, 540
HindII	GTYRAC	2 cut(s)	271, 540
HinfI	GANTC	2 cut(s)	160, 478
HpaI	GTTAAC	2 cut(s)	271, 540
Hpy166II	GTNNAC	3 cut(s)	100, 271, 540
Hpy188I	TCNGA	1 cut(s)	360
Hpy188III	TCNNGA	6 cut(s)	44, 74, 164, 255, 531, 533
Hpy8I	GTNNAC	3 cut(s)	100, 271, 540
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	110, 316, 394
HpyCH4III	ACNGT	2 cut(s)	421, 466
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	88, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	481, 490
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	6 cut(s)	88, 208, 220, 391, 412, 459
Ksp22I	TGATCA	1 cut(s)	355
KspAI	GTTAAC	2 cut(s)	271, 540
Kzo9I	GATC	4 cut(s)	70, 251, 355, 370
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	4 cut(s)	88, 92, 249, 307
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	3 cut(s)	97, 356, 533
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	135
MalI	GATC	4 cut(s)	72, 253, 357, 372
MboI	GATC	4 cut(s)	70, 251, 355, 370
MboII	GAAGA	4 cut(s)	247, 301, 301, 371
MluCI	AATT	3 cut(s)	19, 317, 396
MnlI	CCTC	4 cut(s)	34, 73, 202, 285
Mph1103I	ATGCAT	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	3 cut(s)	270, 495, 539
MslI	CAYNNNNRTG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	481, 490
NdeII	GATC	4 cut(s)	70, 251, 355, 370
NlaIII	CATG	6 cut(s)	88, 208, 220, 391, 412, 459
NsiI	ATGCAT	1 cut(s)	90
NspI	RCATGY	1 cut(s)	88
PaeR7I	CTCGAG	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	160, 478
PkrI	GCNGC	2 cut(s)	38, 148
Ple19I	CGATCG	1 cut(s)	373
PspFI	CCCAGC	1 cut(s)	263
PvuI	CGATCG	1 cut(s)	373
RsaI	GTAC	2 cut(s)	83, 99
RsaNI	GTAC	2 cut(s)	82, 98
RseI	CAYNNNNRTG	1 cut(s)	407
SaqAI	TTAA	3 cut(s)	270, 495, 539
SatI	GCNGC	2 cut(s)	37, 147
Sau3AI	GATC	4 cut(s)	70, 251, 355, 370
SetI	ASST	5 cut(s)	65, 107, 138, 228, 308
SfaNI	GCATC	3 cut(s)	97, 356, 533
SfcI	CTRYAG	1 cut(s)	125
Sfr274I	CTCGAG	1 cut(s)	531
SlaI	CTCGAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	2 cut(s)	230, 531
SmoI	CTYRAG	2 cut(s)	230, 531
Sse9I	AATT	3 cut(s)	19, 317, 396
SsiI	CCGC	2 cut(s)	36, 482
SspI	AATATT	3 cut(s)	196, 336, 452
SspMI	CTAG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	421, 466
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	5 cut(s)	45, 69, 369, 373, 532
TasI	AATT	3 cut(s)	19, 317, 396
TatI	WGTACW	2 cut(s)	81, 97
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	160, 478
Tru1I	TTAA	3 cut(s)	270, 495, 539
Tru9I	TTAA	3 cut(s)	270, 495, 539
TscAI	CASTG	1 cut(s)	469
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	3 cut(s)	200, 376, 444
TspRI	CASTG	1 cut(s)	469
XapI	RAATTY	1 cut(s)	317
XbaI	TCTAGA	1 cut(s)	254
XceI	RCATGY	1 cut(s)	88
XhoI	CTCGAG	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.