Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0028717

Physical Location & Seq

Genomic Coordinates Forward (+)

5084534 .. 5086554

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1045800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATGTATCAACGCTTATCTTTCTTCTTCCATAATTTATTCGCCTTAAAATTGCAAGCTTGTGAGCTATCTCTTGACGACCTCGAGTGTTGCTACAACCCCGGTAGAATCAGTTTTATCAAGTTTCTTAGTCCTCTCAGTCACGGACGCAATATTATCATAGATCCTAGTGAGACTAATCAACAATTTCTCTATTTCCAGGGCTCAAATCGTCCATCGTTTTTAAGGAGGTGGGAACGCCGAAGACGCACAGGCGGTACCTGGCTCGTGACAAGGGCTATGGATGGTCTTTACTGTGTTGGTGATAGCTGCTTTCCAGGACAAGGTGTTATAGCCGTATCCTTCTCAGGAGTAATGTGTGCTCATCGAGTAGCTGCTGACAAAGGGCTTGAGAAGAAGTCCCCTGTATTGGATGCTGCCCTCCTTCGACTACTTAGATGGTTAAGGACATTAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

153

Amino Acids

17.4

Weight (kDa)

9.54

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028717)

Species	Orthologous Gene IDs
malus_domestica	MD12G1045800.v1.1
rosa_chinensis	RchiOBHm_Chr3g0477371

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	1 cut(s)	158
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	323, 409
AjnI	CCWGG	3 cut(s)	198, 260, 316
AluBI	AGCT	4 cut(s)	59, 67, 309, 374
AluI	AGCT	4 cut(s)	59, 67, 309, 374
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	158
Ama87I	CYCGRG	1 cut(s)	83
ApeKI	GCWGC	3 cut(s)	309, 374, 416
Asp718I	GGTACC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	206
BauI	CACGAG	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	3 cut(s)	296, 361, 403
BccI	CCATC	3 cut(s)	223, 278, 432
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	3 cut(s)	200, 262, 318
BciVI	GTATCC	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	3 cut(s)	310, 375, 417
BlsI	GCNGC	3 cut(s)	311, 376, 418
Bme1390I	CCNGG	4 cut(s)	102, 200, 262, 318
BmeT110I	CYCGRG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	4 cut(s)	102, 200, 262, 318
BmsI	GCATC	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	100, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 409
BseBI	CCWGG	3 cut(s)	200, 262, 318
BseDI	CCNNGG	2 cut(s)	100, 199
BseGI	GGATG	2 cut(s)	289, 418
BseLI	CCNNNNNNNGG	2 cut(s)	323, 409
BseMII	CTCAG	2 cut(s)	151, 360
BseXI	GCAGC	3 cut(s)	296, 361, 403
BshNI	GGYRCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	364
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	323, 409
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	385
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	206, 364
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	1 cut(s)	255
BspCNI	CTCAG	2 cut(s)	150, 359
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	100, 199
BssMI	GATC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	266
Bst2BI	CACGAG	1 cut(s)	266
Bst2UI	CCWGG	3 cut(s)	200, 262, 318
Bst4CI	ACNGT	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	4 cut(s)	128, 137, 346, 434
BstF5I	GGATG	2 cut(s)	289, 418
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	3 cut(s)	200, 262, 318
BstSCI	CCNGG	4 cut(s)	100, 198, 260, 316
BstV1I	GCAGC	3 cut(s)	296, 361, 403
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	289, 418
Cac8I	GCNNGC	1 cut(s)	57
CseI	GACGC	2 cut(s)	156, 255
Csp6I	GTAC	1 cut(s)	258
CviJI	RGCY	9 cut(s)	59, 67, 204, 265, 278, 309, 335, 374, 388
CviKI_1	RGCY	9 cut(s)	59, 67, 204, 265, 278, 309, 335, 374, 388
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	4 cut(s)	128, 137, 346, 434
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	83
EcoRII	CCWGG	3 cut(s)	198, 260, 316
EcoT38I	GRGCYC	1 cut(s)	206
FaiI	YATR	4 cut(s)	33, 161, 281, 332
FaqI	GGGAC	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	310, 375, 417
FokI	GGATG	2 cut(s)	296, 425
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	3 cut(s)	310, 375, 417
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	3 cut(s)	310, 375, 417
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	2 cut(s)	156, 255
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	314
Hpy188III	TCNNGA	3 cut(s)	74, 268, 348
HpyAV	CCTTC	2 cut(s)	352, 434
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	1 cut(s)	55
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	4 cut(s)	128, 137, 346, 434
KpnI	GGTACC	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	163
Lsp1109I	GCAGC	3 cut(s)	296, 361, 403
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	140, 268
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	4 cut(s)	16, 19, 255, 406
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	206, 364
MluCI	AATT	3 cut(s)	34, 50, 185
MnlI	CCTC	4 cut(s)	92, 144, 222, 431
MseI	TTAA	3 cut(s)	47, 224, 443
MslI	CAYNNNNRTG	1 cut(s)	454
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	4 cut(s)	102, 200, 262, 318
MvaI	CCWGG	3 cut(s)	200, 262, 318
MwoI	GCNNNNNNNGC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	259
NmuCI	GTSAC	2 cut(s)	140, 268
PaeR7I	CTCGAG	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	108
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	3 cut(s)	311, 376, 418
Psp6I	CCWGG	3 cut(s)	198, 260, 316
PspGI	CCWGG	3 cut(s)	198, 260, 316
PspN4I	GGNNCC	1 cut(s)	259
PspXI	VCTCGAGB	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	454
SaqAI	TTAA	3 cut(s)	47, 224, 443
SatI	GCNGC	3 cut(s)	310, 375, 417
Sau3AI	GATC	1 cut(s)	163
ScrFI	CCNGG	4 cut(s)	102, 200, 262, 318
SduI	GDGCHC	2 cut(s)	206, 364
SetI	ASST	8 cut(s)	61, 69, 84, 233, 263, 311, 328, 376
SfaNI	GCATC	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	454
SmlI	CTYRAG	2 cut(s)	83, 389
SmoI	CTYRAG	2 cut(s)	83, 389
Sse9I	AATT	3 cut(s)	34, 50, 185
SsiI	CCGC	1 cut(s)	255
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	4 cut(s)	100, 198, 260, 316
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	3 cut(s)	84, 367, 427
TasI	AATT	3 cut(s)	34, 50, 185
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	3 cut(s)	47, 224, 443
Tru9I	TTAA	3 cut(s)	47, 224, 443
TseFI	GTSAC	2 cut(s)	140, 268
TseI	GCWGC	3 cut(s)	309, 374, 416
Tsp45I	GTSAC	2 cut(s)	140, 268
TspGWI	ACGGA	1 cut(s)	159
XhoI	CTCGAG	1 cut(s)	83
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.