Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0028706

Physical Location & Seq

Genomic Coordinates Forward (+)

10000471 .. 10000927

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1082000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGATACGAATGGTATTAAGCCTAATGATGTTAGTGTTGTGAGTGCCTTTTTGGCTTGCGGGCAACTAGGGTGTTTGGAGAATGGGGAAGAAATCTACGAGATCATGAGAAAATATGGGATTGTATGCAATATAATGTTTGCCCATGCGGTATGCCTCAGAGGAATATTAGCATACACTGTAAACATGGAGAGTGGAAAGGCATTGGATATGTTTTCAAGGATGCGAAAAGGAGTGAGACGAAACCATGTCATCTATATGGGAACTTTATCTGCATATAGCCATGCTGGGCTAGTAAATGAAGGCAAGGCTTATTTCAGTAACATGGTCCATTCTGGTGACAAGAATATTCAACCGAAAGTTGAGCACTGTGCTTGTATGGTAGACCTGCCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

133

Amino Acids

14.58

Weight (kDa)

7.63

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028706)

Species	Orthologous Gene IDs
malus_domestica	MD12G1082000.v1.1
pyrus_communis	pycom12g06790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	384
AciI	CCGC	2 cut(s)	60, 149
AgsI	TTSAA	2 cut(s)	219, 353
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	68, 293
BglI	GCCNNNNNGGC	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	328
BmsI	GCATC	1 cut(s)	213
BseGI	GGATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	369
BsmAI	GTCTC	1 cut(s)	232
BsmBI	CGTCTC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	2 cut(s)	60, 149
BspCNI	CTCAG	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	105
BssMI	GATC	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	181, 371
BstC8I	GCNNGC	2 cut(s)	58, 62
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	228
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	177, 367
Cac8I	GCNNGC	2 cut(s)	58, 62
CciI	TCATGA	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	328
CviAII	CATG	6 cut(s)	106, 146, 187, 248, 284, 325
CviJI	RGCY	5 cut(s)	22, 56, 282, 292, 311
CviKI_1	RGCY	5 cut(s)	22, 56, 282, 292, 311
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	6 cut(s)	109, 149, 190, 251, 287, 328
FatI	CATG	6 cut(s)	105, 145, 186, 247, 283, 324
FauI	CCCGC	1 cut(s)	53
FblI	GTMKAC	1 cut(s)	384
FokI	GGATG	1 cut(s)	235
FspBI	CTAG	2 cut(s)	68, 293
GsaI	CCCAGC	1 cut(s)	291
Hin1II	CATG	6 cut(s)	109, 149, 190, 251, 287, 328
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	184, 385
Hpy188I	TCNGA	1 cut(s)	161
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	184, 385
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	2 cut(s)	181, 371
HpyCH4V	TGCA	2 cut(s)	129, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	158
Hsp92II	CATG	6 cut(s)	109, 149, 190, 251, 287, 328
Kzo9I	GATC	1 cut(s)	102
LpnPI	CCDG	2 cut(s)	273, 321
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	2 cut(s)	68, 293
MaeIII	GTNAC	2 cut(s)	320, 338
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	369
MnlI	CCTC	2 cut(s)	155, 167
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	2 cut(s)	257, 336
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	6 cut(s)	109, 149, 190, 251, 287, 328
NmuCI	GTSAC	1 cut(s)	338
PagI	TCATGA	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	328
RseI	CAYNNNNRTG	2 cut(s)	257, 336
SaqAI	TTAA	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	1 cut(s)	390
SfaNI	GCATC	1 cut(s)	213
SinI	GGWCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	2 cut(s)	257, 336
SsiI	CCGC	2 cut(s)	60, 149
SspI	AATATT	2 cut(s)	168, 349
SspMI	CTAG	2 cut(s)	68, 293
TaaI	ACNGT	2 cut(s)	181, 371
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	2 cut(s)	184, 374
TseFI	GTSAC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	315
TspRI	CASTG	2 cut(s)	184, 374
VpaK11BI	GGWCC	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	2 cut(s)	68, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.