Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0024421

Physical Location & Seq

Genomic Coordinates Forward (+)

10356517 .. 10357927

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1084500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCTGGCTCGGTTTATTCTATCTCAGAAATATGGCACTGGTATTGCAATTTCCGCCAATTCTCAGATTGCTCAGTATGCTTGGCTTGGCCAAATTGAGAAAGCCCGAAGGGTGTTTGATCAAATGCCTGATAAAAATATTGTGTCTTGGAACTCAATGGTTGGAGGTTACTTCCAAGGTAATCAGCCAGGAGAAGCCCGAAGATTGTTTGATAAAATGCAGGAGCGGAATACAGTTTCTTGGAACGGTTTGATATCAGGGTATGTCAAGAATGGGATGATTAGTGAGGCTAGGAAAGTGTTTGATTCAATGCCCGAAAGGAACGTTGTTTCATGGACATTGATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

117

Amino Acids

13.21

Weight (kDa)

9.81

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	45 - 77	2.3e-07	PPR repeat family
PPR	PF01535	48 - 77	1.6e-07	PPR repeat
PPR_2	PF13041	76 - 109	4.9e-09	PPR repeat family
PPR_1	PF12854	76 - 104	1.1e-06	PPR repeat
PPR	PF01535	79 - 109	6.8e-10	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0024421)

Species	Orthologous Gene IDs
malus_domestica	MD12G1084500.v1.1
pyrus_communis	pycom12g07160 pycom14g06780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	226
AciI	CCGC	2 cut(s)	54, 226
AclI	AACGTT	1 cut(s)	324
AcoI	YGGCCR	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	309
AjnI	CCWGG	1 cut(s)	187
AoxI	GGCC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	90
BccI	CCATC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	1 cut(s)	118
BfaI	CTAG	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	282
BseMII	CTCAG	3 cut(s)	38, 77, 86
BseNI	ACTGG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	2 cut(s)	54, 226
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	3 cut(s)	37, 76, 85
BsrBI	CCGCTC	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	235, 248
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	24, 63, 72
BstF5I	GGATG	1 cut(s)	282
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 77
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	6
CviAII	CATG	1 cut(s)	333
CviJI	RGCY	7 cut(s)	8, 85, 90, 104, 187, 197, 290
CviKI_1	RGCY	7 cut(s)	8, 85, 90, 104, 187, 197, 290
DdeI	CTNAG	3 cut(s)	24, 63, 72
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	1 cut(s)	336
FaiI	YATR	4 cut(s)	33, 78, 264, 334
FatI	CATG	1 cut(s)	332
FbaI	TGATCA	1 cut(s)	118
FokI	GGATG	1 cut(s)	289
FspBI	CTAG	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	336
HinfI	GANTC	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	27, 66
Hpy188III	TCNNGA	1 cut(s)	268
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	2 cut(s)	235, 248
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	47, 220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 77
HpyF3I	CTNAG	3 cut(s)	24, 63, 72
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	336
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	6 cut(s)	24, 141, 174, 201, 206, 243
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	1 cut(s)	120
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	1 cut(s)	118
MboII	GAAGA	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	3 cut(s)	48, 58, 93
MluNI	TGGCCA	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	2 cut(s)	158, 280
Mox20I	TGGCCA	1 cut(s)	90
MscI	TGGCCA	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	53, 77
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	305
Psp1406I	AACGTT	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
Sau3AI	GATC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	3 cut(s)	169, 181, 327
Sse9I	AATT	3 cut(s)	48, 58, 93
SsiI	CCGC	2 cut(s)	54, 226
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	235, 248
TaiI	ACGT	1 cut(s)	327
TasI	AATT	3 cut(s)	48, 58, 93
TfiI	GAWTC	1 cut(s)	305
TscAI	CASTG	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	43
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.