Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD12G1118300.v1.1 |
| pyrus_communis | pycom04g09210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 34 |
| AfaI | GTAC | 3 cut(s) | 166, 206, 277 |
| AfeI | AGCGCT | 1 cut(s) | 56 |
| AflIII | ACRYGT | 1 cut(s) | 292 |
| AgsI | TTSAA | 1 cut(s) | 38 |
| Alw21I | GWGCWC | 1 cut(s) | 264 |
| Alw26I | GTCTC | 1 cut(s) | 239 |
| AlwI | GGATC | 1 cut(s) | 34 |
| Aor51HI | AGCGCT | 1 cut(s) | 56 |
| ApeKI | GCWGC | 1 cut(s) | 363 |
| AspLEI | GCGC | 1 cut(s) | 57 |
| AspS9I | GGNCC | 1 cut(s) | 189 |
| AvaII | GGWCC | 1 cut(s) | 189 |
| BbsI | GAAGAC | 1 cut(s) | 130 |
| Bbv12I | GWGCWC | 1 cut(s) | 264 |
| BbvI | GCAGC | 1 cut(s) | 375 |
| BccI | CCATC | 1 cut(s) | 266 |
| BceAI | ACGGC | 1 cut(s) | 345 |
| BcoDI | GTCTC | 1 cut(s) | 239 |
| BfoI | RGCGCY | 1 cut(s) | 58 |
| BisI | GCNGC | 1 cut(s) | 364 |
| BlsI | GCNGC | 1 cut(s) | 365 |
| Bme18I | GGWCC | 1 cut(s) | 189 |
| BmgT120I | GGNCC | 1 cut(s) | 189 |
| BmiI | GGNNCC | 1 cut(s) | 190 |
| BpiI | GAAGAC | 1 cut(s) | 130 |
| Bse1I | ACTGG | 3 cut(s) | 127, 219, 283 |
| BseNI | ACTGG | 3 cut(s) | 127, 219, 283 |
| BseXI | GCAGC | 1 cut(s) | 375 |
| BsgI | GTGCAG | 2 cut(s) | 15, 303 |
| BsiHKAI | GWGCWC | 1 cut(s) | 264 |
| BsmAI | GTCTC | 1 cut(s) | 239 |
| Bsp1286I | GDGCHC | 1 cut(s) | 264 |
| Bsp1407I | TGTACA | 1 cut(s) | 204 |
| Bsp143I | GATC | 1 cut(s) | 26 |
| BspHI | TCATGA | 1 cut(s) | 321 |
| BspLI | GGNNCC | 1 cut(s) | 190 |
| BspPI | GGATC | 1 cut(s) | 34 |
| BsrGI | TGTACA | 1 cut(s) | 204 |
| BsrI | ACTGG | 3 cut(s) | 127, 219, 283 |
| BssMI | GATC | 1 cut(s) | 26 |
| Bst4CI | ACNGT | 1 cut(s) | 131 |
| BstAUI | TGTACA | 1 cut(s) | 204 |
| BstH2I | RGCGCY | 1 cut(s) | 58 |
| BstHHI | GCGC | 1 cut(s) | 57 |
| BstKTI | GATC | 1 cut(s) | 29 |
| BstMAI | GTCTC | 1 cut(s) | 239 |
| BstMBI | GATC | 1 cut(s) | 26 |
| BstV1I | GCAGC | 1 cut(s) | 375 |
| BstV2I | GAAGAC | 1 cut(s) | 130 |
| BstX2I | RGATCY | 1 cut(s) | 26 |
| BstYI | RGATCY | 1 cut(s) | 26 |
| BtsIMutI | CAGTG | 3 cut(s) | 127, 248, 319 |
| CciI | TCATGA | 1 cut(s) | 321 |
| CfoI | GCGC | 1 cut(s) | 57 |
| Cfr13I | GGNCC | 1 cut(s) | 189 |
| Csp6I | GTAC | 3 cut(s) | 165, 205, 276 |
| CviAII | CATG | 4 cut(s) | 98, 142, 257, 322 |
| CviQI | GTAC | 3 cut(s) | 165, 205, 276 |
| DpnI | GATC | 1 cut(s) | 28 |
| DpnII | GATC | 1 cut(s) | 26 |
| Eco47I | GGWCC | 1 cut(s) | 189 |
| Eco47III | AGCGCT | 1 cut(s) | 56 |
| EcoO109I | RGGNCCY | 1 cut(s) | 189 |
| FaeI | CATG | 4 cut(s) | 101, 145, 260, 325 |
| FaiI | YATR | 9 cut(s) | 47, 84, 99, 143, 195, 224, 233, 258, 323 |
| FatI | CATG | 4 cut(s) | 97, 141, 256, 321 |
| Fnu4HI | GCNGC | 1 cut(s) | 364 |
| Fsp4HI | GCNGC | 1 cut(s) | 364 |
| GlaI | GCGC | 1 cut(s) | 56 |
| GluI | GCNGC | 1 cut(s) | 364 |
| HaeII | RGCGCY | 1 cut(s) | 58 |
| HhaI | GCGC | 1 cut(s) | 57 |
| Hin1II | CATG | 4 cut(s) | 101, 145, 260, 325 |
| Hin6I | GCGC | 1 cut(s) | 55 |
| HinP1I | GCGC | 1 cut(s) | 55 |
| HinfI | GANTC | 2 cut(s) | 146, 346 |
| Hpy188I | TCNGA | 3 cut(s) | 16, 151, 244 |
| Hpy188III | TCNNGA | 5 cut(s) | 24, 116, 170, 269, 322 |
| HpyCH4III | ACNGT | 1 cut(s) | 131 |
| HpyCH4IV | ACGT | 1 cut(s) | 294 |
| HpyCH4V | TGCA | 2 cut(s) | 32, 284 |
| HpySE526I | ACGT | 1 cut(s) | 294 |
| Hsp92II | CATG | 4 cut(s) | 101, 145, 260, 325 |
| HspAI | GCGC | 1 cut(s) | 55 |
| Kzo9I | GATC | 1 cut(s) | 26 |
| LpnPI | CCDG | 5 cut(s) | 9, 101, 108, 200, 264 |
| Lsp1109I | GCAGC | 1 cut(s) | 375 |
| MaeII | ACGT | 1 cut(s) | 294 |
| MaeIII | GTNAC | 1 cut(s) | 125 |
| MalI | GATC | 1 cut(s) | 28 |
| MboI | GATC | 1 cut(s) | 26 |
| MboII | GAAGA | 2 cut(s) | 130, 164 |
| MflI | RGATCY | 1 cut(s) | 26 |
| MhlI | GDGCHC | 1 cut(s) | 264 |
| MluCI | AATT | 2 cut(s) | 19, 238 |
| MmeI | TCCRAC | 1 cut(s) | 277 |
| MnlI | CCTC | 1 cut(s) | 61 |
| MseI | TTAA | 1 cut(s) | 288 |
| NdeII | GATC | 1 cut(s) | 26 |
| NlaIII | CATG | 4 cut(s) | 101, 145, 260, 325 |
| NlaIV | GGNNCC | 1 cut(s) | 190 |
| NmuCI | GTSAC | 1 cut(s) | 125 |
| PagI | TCATGA | 1 cut(s) | 321 |
| PfeI | GAWTC | 2 cut(s) | 146, 346 |
| PkrI | GCNGC | 1 cut(s) | 365 |
| PpuMI | RGGWCCY | 1 cut(s) | 189 |
| Psp5II | RGGWCCY | 1 cut(s) | 189 |
| PspN4I | GGNNCC | 1 cut(s) | 190 |
| PspPI | GGNCC | 1 cut(s) | 189 |
| PspPPI | RGGWCCY | 1 cut(s) | 189 |
| PsuI | RGATCY | 1 cut(s) | 26 |
| RsaI | GTAC | 3 cut(s) | 166, 206, 277 |
| RsaNI | GTAC | 3 cut(s) | 165, 205, 276 |
| SaqAI | TTAA | 1 cut(s) | 288 |
| SatI | GCNGC | 1 cut(s) | 364 |
| Sau3AI | GATC | 1 cut(s) | 26 |
| Sau96I | GGNCC | 1 cut(s) | 189 |
| SduI | GDGCHC | 1 cut(s) | 264 |
| SetI | ASST | 4 cut(s) | 163, 177, 297, 310 |
| SinI | GGWCC | 1 cut(s) | 189 |
| Sse9I | AATT | 2 cut(s) | 19, 238 |
| TaaI | ACNGT | 1 cut(s) | 131 |
| TaiI | ACGT | 1 cut(s) | 297 |
| TaqI | TCGA | 2 cut(s) | 94, 268 |
| TasI | AATT | 2 cut(s) | 19, 238 |
| TatI | WGTACW | 1 cut(s) | 204 |
| TfiI | GAWTC | 2 cut(s) | 146, 346 |
| Tru1I | TTAA | 1 cut(s) | 288 |
| Tru9I | TTAA | 1 cut(s) | 288 |
| TscAI | CASTG | 3 cut(s) | 134, 255, 319 |
| TseFI | GTSAC | 1 cut(s) | 125 |
| TseI | GCWGC | 1 cut(s) | 363 |
| Tsp45I | GTSAC | 1 cut(s) | 125 |
| TspDTI | ATGAA | 5 cut(s) | 114, 130, 310, 318, 338 |
| TspRI | CASTG | 3 cut(s) | 134, 255, 319 |
| VpaK11BI | GGWCC | 1 cut(s) | 189 |