MD13G1021800.v1.1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0028259
Physical Location & Seq
Reverse (-)
1571773 .. 1573404
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1021800.v1.1.491

Sequence Viewer

Length: 1137 bp
ATGTTGGCCTCGGCAGTCCAACCGCCGTTAACGGTGAAACCGCCTCATCTCCACCAGTCCTCACCCTGCATCTCAAACACCCACATGGAAGTCATTGCAGCTAAACCCACCAGACCCAGAAACAGAAGGAAAGCACTATTCTTCCATTCAATTTGTTCCCAATGCCTCAACCTCAAATCATTCTCCCGCCGCCAATTTCTCACAAGGGTCAGCGGTAGCGACGGCGGCGGTGCGGCTGATGCCACCCCACAACAGTATAAACCACCCACTGACACTAAAGAGATAAAGAGTAGTTCTTTGGGTGACGGGTATGTCGGCTTGTTTATTCGGATGCTCGGTCTGGCCAATGATTCCCTTGATAGAGAGCAGGCTATAGTGGCACTCTGGAAATACTCACTTGGAGGGAAGCAATATGTTGATGCCATTATGCAGTTTCCTGGCTGCATAAACCTGATTGTAAACTTGCTGAGGTCGGAATCCAGTTCTGCGTGTGAAGCTGCCGCTGGACTTTTAAGATCGATATCCCTTGTTAATTTGTATAGAGATGTGAAGGAGCAAGCTATATGTACTTTGTGGAACTTGTCCGTTGATGAGAAGTTCAGAGAGAAAATTGCAAACAGTGATGTGCTGCCATTACTTGTTAAGTCCGTGGATGATGAGGACATAAAGGTGAAGGAAGCAGCTGGAGGGGTGTTGGCAAATTTGGCATTAAGTCACTTTAGTCACAGCATTATGGTTGAAGCAGGTGTTATACCAAAATTGGACCCAATCAACATGGAAGTAACTCTCCACCAGACCATTCCAAGACTCATGGAGCAGCTAAAAACCTCATTCGTTCCAGAAGAAAAGGAAGCTGCAGTTGTAGAACTCAACAGAATAATCTCTGAAGGGGTGGTTGATTCCACTCGAGCCATTGCTTCCGAAGGAGGCGTATTTCTGTTGGTCAAACTGATTGAAGAAGGGAGTGAGAGGGCCATTGAAGCAAGCTTGGCGATACTGTATAATCTGAGCATGGACAGTGAGAATCATTCAGCAATTGTAGTTGCCGGAGCAGTTCCCGTTTTGAGGAGAATTGTCCTATCACAAAGACCACAGTGGAACCGGGCACTTCATTTGCTGAGGACTCTACCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm KAP

Protein Analysis

379

Amino Acids

41.39

Weight (kDa)

7.66

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028259)

Species Orthologous Gene IDs
malus_domestica MD13G1021800.v1.1
pyrus_communis pycom13g02040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 734
AasI GACNNNNNNGTC 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 734
AciI CCGC 9 cut(s) 23, 41, 187, 190, 213, 225, 228, 233, 501
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 1 cut(s) 700
AcuI CTGAAG 1 cut(s) 906
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 1 cut(s) 1065
AgsI TTSAA 4 cut(s) 150, 740, 956, 980
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 7 cut(s) 101, 497, 560, 683, 820, 854, 987
AluI AGCT 7 cut(s) 101, 497, 560, 683, 820, 854, 987
Ama87I CYCGRG 1 cut(s) 906
AoxI GGCC 3 cut(s) 6, 342, 972
ApeKI GCWGC 7 cut(s) 98, 441, 497, 628, 680, 817, 854
ApoI RAATTY 1 cut(s) 700
AspS9I GGNCC 2 cut(s) 763, 972
AsuC2I CCSGG 1 cut(s) 1103
AsuHPI GGTGA 4 cut(s) 46, 54, 314, 682
AvaI CYCGRG 1 cut(s) 906
AvaII GGWCC 1 cut(s) 763
BaeGI GKGCMC 1 cut(s) 1108
BalI TGGCCA 1 cut(s) 344
BbvCI CCTCAGC 2 cut(s) 467, 1118
BbvI GCAGC 7 cut(s) 110, 428, 484, 615, 692, 829, 841
BceAI ACGGC 2 cut(s) 10, 238
BciT130I CCWGG 1 cut(s) 438
BcnI CCSGG 1 cut(s) 1103
BfmI CTRYAG 2 cut(s) 372, 855
BfuAI ACCTGC 1 cut(s) 734
Bme1390I CCNGG 2 cut(s) 438, 1103
Bme18I GGWCC 1 cut(s) 763
BmeT110I CYCGRG 1 cut(s) 906
BmgT120I GGNCC 2 cut(s) 763, 972
BmiI GGNNCC 2 cut(s) 765, 1100
BmrFI CCNGG 2 cut(s) 438, 1103
BmsI GCATC 4 cut(s) 78, 229, 321, 409
BpmI CTGGAG 1 cut(s) 705
Bpu10I CCTNAGC 2 cut(s) 467, 1118
BpuMI CCSGG 1 cut(s) 1103
Bsa29I ATCGAT 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 520
BsaJI CCNNGG 2 cut(s) 9, 648
Bsc4I CCNNNNNNNGG 1 cut(s) 1065
Bse1I ACTGG 2 cut(s) 55, 480
Bse3DI GCAATG 2 cut(s) 93, 912
Bse8I GATNNNNATC 1 cut(s) 520
BseBI CCWGG 1 cut(s) 438
BseCI ATCGAT 1 cut(s) 518
BseDI CCNNGG 2 cut(s) 9, 648
BseGI GGATG 2 cut(s) 336, 658
BseJI GATNNNNATC 1 cut(s) 520
BseLI CCNNNNNNNGG 1 cut(s) 1065
BseMI GCAATG 2 cut(s) 93, 912
BseMII CTCAG 3 cut(s) 458, 998, 1109
BseNI ACTGG 2 cut(s) 55, 480
BseRI GAGGAG 1 cut(s) 1081
BseSI GKGCMC 1 cut(s) 1108
BseXI GCAGC 7 cut(s) 110, 428, 484, 615, 692, 829, 841
BshFI GGCC 3 cut(s) 8, 344, 974
BshVI ATCGAT 1 cut(s) 518
BsiHKCI CYCGRG 1 cut(s) 906
BsiSI CCGG 2 cut(s) 1047, 1102
BslI CCNNNNNNNGG 1 cut(s) 1065
BsnI GGCC 3 cut(s) 8, 344, 974
BsoBI CYCGRG 1 cut(s) 906
Bsp1286I GDGCHC 1 cut(s) 1108
Bsp143I GATC 1 cut(s) 515
BspACI CCGC 9 cut(s) 23, 41, 187, 190, 213, 225, 228, 233, 501
BspANI GGCC 3 cut(s) 8, 344, 974
BspCNI CTCAG 3 cut(s) 459, 999, 1110
BspDI ATCGAT 1 cut(s) 518
BspLI GGNNCC 2 cut(s) 765, 1100
BspMAI CTGCAG 1 cut(s) 859
BspMI ACCTGC 1 cut(s) 734
BsrDI GCAATG 2 cut(s) 93, 912
BsrI ACTGG 2 cut(s) 55, 480
BssECI CCNNGG 2 cut(s) 9, 648
BssMI GATC 1 cut(s) 515
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 6 cut(s) 34, 255, 620, 999, 1019, 1095
BstC8I GCNNGC 3 cut(s) 369, 558, 985
BstDEI CTNAG 3 cut(s) 467, 1007, 1118
BstDSI CCRYGG 1 cut(s) 648
BstF5I GGATG 2 cut(s) 336, 658
BstKTI GATC 1 cut(s) 518
BstMBI GATC 1 cut(s) 515
BstMWI GCNNNNNNNGC 7 cut(s) 225, 239, 377, 494, 704, 980, 989
BstNI CCWGG 1 cut(s) 438
BstSCI CCNGG 2 cut(s) 436, 1101
BstSFI CTRYAG 2 cut(s) 372, 855
BstSLI GKGCMC 1 cut(s) 1108
BstV1I GCAGC 7 cut(s) 110, 428, 484, 615, 692, 829, 841
Bsu15I ATCGAT 1 cut(s) 518
BsuRI GGCC 3 cut(s) 8, 344, 974
BsuTUI ATCGAT 1 cut(s) 518
BtgI CCRYGG 1 cut(s) 648
BtsCI GGATG 2 cut(s) 336, 658
BtsIMutI CAGTG 4 cut(s) 267, 625, 1024, 1100
BveI ACCTGC 1 cut(s) 734
Cac8I GCNNGC 3 cut(s) 369, 558, 985
Cfr13I GGNCC 2 cut(s) 763, 972
ClaI ATCGAT 1 cut(s) 518
Csp6I GTAC 1 cut(s) 567
CviAII CATG 4 cut(s) 85, 775, 811, 1012
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 3 cut(s) 467, 1007, 1118
DpnI GATC 1 cut(s) 517
DpnII GATC 1 cut(s) 515
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 342
Eco32I GATATC 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 763
Eco57I CTGAAG 1 cut(s) 906
Eco88I CYCGRG 1 cut(s) 906
EcoRII CCWGG 1 cut(s) 436
EcoRV GATATC 1 cut(s) 522
FaeI CATG 4 cut(s) 88, 778, 814, 1015
FatI CATG 4 cut(s) 84, 774, 810, 1011
FauI CCCGC 1 cut(s) 194
FokI GGATG 2 cut(s) 343, 665
GsuI CTGGAG 1 cut(s) 705
HaeIII GGCC 3 cut(s) 8, 344, 974
HapII CCGG 2 cut(s) 1047, 1102
Hin1II CATG 4 cut(s) 88, 778, 814, 1015
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HindIII AAGCTT 1 cut(s) 985
HinfI GANTC 6 cut(s) 350, 476, 807, 899, 1024, 1123
HpaI GTTAAC 1 cut(s) 30
HpaII CCGG 2 cut(s) 1047, 1102
HphI GGTGA 4 cut(s) 46, 54, 314, 682
Hpy166II GTNNAC 2 cut(s) 30, 460
Hpy188I TCNGA 6 cut(s) 330, 475, 602, 886, 922, 1008
Hpy188III TCNNGA 2 cut(s) 385, 839
Hpy8I GTNNAC 2 cut(s) 30, 460
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 6 cut(s) 120, 544, 667, 881, 917, 953
HpyCH4III ACNGT 6 cut(s) 34, 255, 620, 999, 1019, 1095
HpyCH4V TGCA 6 cut(s) 69, 98, 430, 444, 614, 857
HpyF10VI GCNNNNNNNGC 7 cut(s) 225, 239, 377, 494, 704, 980, 989
HpyF3I CTNAG 3 cut(s) 467, 1007, 1118
Hsp92II CATG 4 cut(s) 88, 778, 814, 1015
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 515
LmnI GCTCC 3 cut(s) 553, 814, 1049
Lsp1109I GCAGC 7 cut(s) 110, 428, 484, 615, 692, 829, 841
LweI GCATC 4 cut(s) 78, 229, 321, 409
MaeIII GTNAC 4 cut(s) 302, 713, 722, 781
MalI GATC 1 cut(s) 517
MboI GATC 1 cut(s) 515
MboII GAAGA 3 cut(s) 133, 854, 968
MfeI CAATTG 1 cut(s) 1035
MhlI GDGCHC 1 cut(s) 1108
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 8 cut(s) 150, 194, 532, 609, 700, 758, 1035, 1071
MluNI TGGCCA 1 cut(s) 344
MlyI GAGTC 2 cut(s) 801, 1117
MmeI TCCRAC 2 cut(s) 43, 453
Mox20I TGGCCA 1 cut(s) 344
MscI TGGCCA 1 cut(s) 344
MseI TTAA 5 cut(s) 29, 512, 531, 642, 710
MslI CAYNNNNRTG 2 cut(s) 83, 668
Msp20I TGGCCA 1 cut(s) 344
MspA1I CMGCKG 3 cut(s) 213, 503, 683
MspI CCGG 2 cut(s) 1047, 1102
MspR9I CCNGG 2 cut(s) 438, 1103
MunI CAATTG 1 cut(s) 1035
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 7 cut(s) 225, 239, 377, 494, 704, 980, 989
NciI CCSGG 1 cut(s) 1103
NdeII GATC 1 cut(s) 515
NlaIII CATG 4 cut(s) 88, 778, 814, 1015
NlaIV GGNNCC 2 cut(s) 765, 1100
NmuCI GTSAC 3 cut(s) 302, 713, 722
PaeR7I CTCGAG 1 cut(s) 906
PaqCI CACCTGC 1 cut(s) 734
PfeI GAWTC 4 cut(s) 350, 476, 899, 1024
PleI GAGTC 2 cut(s) 801, 1117
PpsI GAGTC 2 cut(s) 801, 1117
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 765, 1100
PspPI GGNCC 2 cut(s) 763, 972
PspXI VCTCGAGB 1 cut(s) 906
PstI CTGCAG 1 cut(s) 859
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
RseI CAYNNNNRTG 2 cut(s) 83, 668
SaqAI TTAA 5 cut(s) 29, 512, 531, 642, 710
Sau3AI GATC 1 cut(s) 515
Sau96I GGNCC 2 cut(s) 763, 972
SchI GAGTC 2 cut(s) 801, 1117
ScrFI CCNGG 2 cut(s) 438, 1103
SduI GDGCHC 1 cut(s) 1108
SfaNI GCATC 4 cut(s) 78, 229, 321, 409
SfcI CTRYAG 2 cut(s) 372, 855
Sfr274I CTCGAG 1 cut(s) 906
SinI GGWCC 1 cut(s) 763
SlaI CTCGAG 1 cut(s) 906
SmiMI CAYNNNNRTG 2 cut(s) 83, 668
SmlI CTYRAG 1 cut(s) 906
SmoI CTYRAG 1 cut(s) 906
Sse9I AATT 8 cut(s) 150, 194, 532, 609, 700, 758, 1035, 1071
SsiI CCGC 9 cut(s) 23, 41, 187, 190, 213, 225, 228, 233, 501
StyD4I CCNGG 2 cut(s) 436, 1101
TaaI ACNGT 6 cut(s) 34, 255, 620, 999, 1019, 1095
TaqI TCGA 2 cut(s) 518, 907
TaqII GACCGA 1 cut(s) 326
TasI AATT 8 cut(s) 150, 194, 532, 609, 700, 758, 1035, 1071
TatI WGTACW 1 cut(s) 566
TauI GCSGC 4 cut(s) 192, 228, 236, 503
TfiI GAWTC 4 cut(s) 350, 476, 899, 1024
Tru1I TTAA 5 cut(s) 29, 512, 531, 642, 710
Tru9I TTAA 5 cut(s) 29, 512, 531, 642, 710
TscAI CASTG 4 cut(s) 274, 625, 1024, 1100
TseFI GTSAC 3 cut(s) 302, 713, 722
TseI GCWGC 7 cut(s) 98, 441, 497, 628, 680, 817, 854
Tsp45I GTSAC 3 cut(s) 302, 713, 722
TspDTI ATGAA 1 cut(s) 1100
TspGWI ACGGA 2 cut(s) 574, 637
TspRI CASTG 4 cut(s) 274, 625, 1024, 1100
VpaK11BI GGWCC 1 cut(s) 763
XapI RAATTY 1 cut(s) 700
XhoI CTCGAG 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.