Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0028252

Physical Location & Seq

Genomic Coordinates Reverse (-)

4346466 .. 4348173

Gene Structure 1708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1062200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGATGAAGCAGGGATATGCTCTTGTTGCGGTGAAAAGCTCGTCTCTATCGACATTGATCCGAAAGAGACTGAGAATTTTACTACCTCTTTGAGTTGGCTAGCCAAAGGGAGGTTCGGGGTGATTTTGTTCGATTCCAGGGTTTCTTGTTGGCTTCAAGGGCATGGTCCATTCGATGCTGTTGTAGATGGTGCCAATGTTGGTCTTATCAATCAACATAATTTCAGCTTTTTCCAGCTCAATACTCTGGTGAACTGGTTACGCCAAATGAGCCCATCAAAGAGATTGCCACTTGTTATATTGCACCAAAATCGTGTAACTGGCGGCCCTGCTCAGAATCCTAATAACAAGAGATTGTTAGAGAGTTGGAAAAAGTCCTGTGCACTTTACGCTACTCCAGTGGGTTCAAATGATGATTGGTACTGGTTGTACGCTGCTGTTAATTGCAAGTGTTTGCTGGTGACAAACGATGAGATGAGAGACCACTTGTTCCAACTTCTAGGGACTAGTTTTTTCCCAAGATGGAAGGAAAAACATCAGACGTTTGGTGTCCATAAGCAAAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

190

Amino Acids

21.49

Weight (kDa)

8.48

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRORP	PF16953	1 - 182	4.3e-53	Protein-only RNase P
RNase_Zc3h12a	PF11977	60 - 163	6.5e-06	Zc3h12a-like Ribonuclease NYN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028252)

Species	Orthologous Gene IDs
malus_domestica	MD13G1062200.v1.1
pyrus_communis	pycom13g05470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AciI	CCGC	2 cut(s)	30, 324
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	76
AfaI	GTAC	2 cut(s)	422, 431
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	2 cut(s)	158, 408
AhlI	ACTAGT	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	4 cut(s)	40, 228, 238, 566
AluI	AGCT	4 cut(s)	40, 228, 238, 566
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	3 cut(s)	49, 62, 474
Alw44I	GTGCAC	1 cut(s)	381
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	325
ApaLI	GTGCAC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	76
AspS9I	GGNCC	2 cut(s)	167, 326
AsuHPI	GGTGA	4 cut(s)	44, 133, 262, 472
AsuNHI	GCTAGC	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	385
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	3 cut(s)	182, 283, 516
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	139
BcoDI	GTCTC	3 cut(s)	49, 62, 474
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	3 cut(s)	101, 500, 507
BisI	GCNGC	2 cut(s)	325, 435
BlsI	GCNGC	2 cut(s)	326, 436
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	167, 326
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	166
BmtI	GCTAGC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	4 cut(s)	260, 325, 398, 428
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	63, 347
BseNI	ACTGG	4 cut(s)	260, 325, 398, 428
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	1 cut(s)	421
BshFI	GGCC	1 cut(s)	327
BshNI	GGYRCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	385
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	3 cut(s)	49, 62, 474
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	517
BsnI	GGCC	1 cut(s)	327
Bso31I	GGTCTC	1 cut(s)	474
Bsp1286I	GDGCHC	2 cut(s)	275, 385
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	2 cut(s)	30, 324
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	2 cut(s)	64, 346
BspLI	GGNNCC	1 cut(s)	193
BspOI	GCTAGC	1 cut(s)	104
BspPI	GGATC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	474
BsrI	ACTGG	4 cut(s)	260, 325, 398, 428
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	72, 333
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	3 cut(s)	49, 62, 474
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 160, 270, 389
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	167, 326
Csp6I	GTAC	2 cut(s)	421, 430
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	9 cut(s)	40, 100, 104, 154, 228, 238, 273, 327, 566
CviKI_1	RGCY	9 cut(s)	40, 100, 104, 154, 228, 238, 273, 327, 566
CviQI	GTAC	2 cut(s)	421, 430
DdeI	CTNAG	2 cut(s)	72, 333
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	1 cut(s)	167
FaiI	YATR	5 cut(s)	19, 165, 219, 299, 555
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	325, 435
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	325, 435
FspBI	CTAG	3 cut(s)	101, 500, 507
GluI	GCNGC	2 cut(s)	325, 435
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	327
Hin1II	CATG	1 cut(s)	167
HinfI	GANTC	2 cut(s)	134, 337
HphI	GGTGA	4 cut(s)	44, 133, 262, 472
Hpy166II	GTNNAC	2 cut(s)	253, 383
Hpy188I	TCNGA	3 cut(s)	63, 336, 540
Hpy8I	GTNNAC	2 cut(s)	253, 383
HpyAV	CCTTC	1 cut(s)	520
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	3 cut(s)	304, 383, 447
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 160, 270, 389
HpyF3I	CTNAG	2 cut(s)	72, 333
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	58
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	3 cut(s)	101, 500, 507
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	3 cut(s)	258, 316, 460
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	275, 385
MluCI	AATT	3 cut(s)	76, 220, 442
MmeI	TCCRAC	2 cut(s)	347, 517
MnlI	CCTC	2 cut(s)	97, 105
MseI	TTAA	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	4 cut(s)	27, 160, 270, 389
NdeII	GATC	1 cut(s)	58
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	134, 337
PkrI	GCNGC	2 cut(s)	326, 436
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	167, 326
RsaI	GTAC	2 cut(s)	422, 431
RsaNI	GTAC	2 cut(s)	421, 430
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	2 cut(s)	325, 435
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	2 cut(s)	167, 326
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	2 cut(s)	275, 385
SetI	ASST	7 cut(s)	42, 89, 116, 230, 240, 545, 568
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	167
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	3 cut(s)	76, 220, 442
SsiI	CCGC	2 cut(s)	30, 324
SspMI	CTAG	3 cut(s)	101, 500, 507
StyD4I	CCNGG	1 cut(s)	137
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	3 cut(s)	51, 132, 174
TasI	AATT	3 cut(s)	76, 220, 442
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	2 cut(s)	134, 337
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	405
VneI	GTGCAC	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	76
XspI	CTAG	3 cut(s)	101, 500, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.