Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0028282

Physical Location & Seq

Genomic Coordinates Forward (+)

4621565 .. 4621983

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1067100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGGTAATCATAACTTTAGTCAGTTATCGAGGCTGATTTCTAATATGTCCTTTTCACTGTCAAGGCAATATGTGCCGACTCTTTTCTGGGTTTTTCTGTGCTCAAGATATGATTTGCATTCTGAAATTTATGATTCGATTGGAAATCACGATGACATACCGACATGCGTTGGATACTCGGGCGAAACCAGTAAGCTCTTATCTACATTCCACTCTCATTGGCATTGGATTCTGATTGACCCTGTAAGTATAGATTTTGACCTTTACACAAGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000151 GO:0000278 GO:0000775 GO:0000776 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009524 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0022402 GO:0030071 GO:0031461 GO:0031577 GO:0032182 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033597 GO:0043130 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0080008 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902494 GO:1903047 GO:1905818 GO:1905819 GO:1990234 GO:1990298 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko05166 map04110 map04111 map05166

Pfam Domains

Protein Families

WD40

Protein Analysis

93

Amino Acids

10.72

Weight (kDa)

5.47

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028282)

Species	Orthologous Gene IDs
malus_domestica	MD13G1067100.v1.1
pyrus_communis	pycom06g01810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	126
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw21I	GWGCWC	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	126
AvaI	CYCGRG	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNSI	RCATGY	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	200, 235
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	2 cut(s)	34, 196
CviKI_1	RGCY	2 cut(s)	34, 196
Eco88I	CYCGRG	1 cut(s)	178
FaeI	CATG	1 cut(s)	168
FaiI	YATR	8 cut(s)	12, 47, 72, 111, 132, 158, 166, 251
FatI	CATG	1 cut(s)	164
Hin1II	CATG	1 cut(s)	168
HinfI	GANTC	3 cut(s)	79, 134, 229
Hpy188I	TCNGA	2 cut(s)	124, 234
Hpy188III	TCNNGA	2 cut(s)	105, 149
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
Hsp92II	CATG	1 cut(s)	168
LpnPI	CCDG	3 cut(s)	73, 202, 255
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	168
NspI	RCATGY	1 cut(s)	168
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	134, 229
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	2 cut(s)	198, 264
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	29, 137
TasI	AATT	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	134, 229
TscAI	CASTG	1 cut(s)	63
TspRI	CASTG	1 cut(s)	63
XapI	RAATTY	1 cut(s)	126
XceI	RCATGY	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.