Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0028281

Physical Location & Seq

Genomic Coordinates Forward (+)

6540509 .. 6541718

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1092600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCTTGCTTTTCGTTTTGCAGTTTTACGTTCAGCTCGTTTAATGGAATATTTCCTTGATCATGCTAAAGACAACACAGAGAAGGGTTTAGAAACCTGCAGGATTCTTGGCGCCTTTCTTACACATCTTTCTCAAAGTTGTTTCATATCATCAGTGGATTGCCACACTCATTCTTCATATCAGGAACCATGGGCAGCATTTTTATCTGGTTCCCCCGGTATGCTGTCCTCAGCGAAGTCCTATAACATTTCTCTTTCCAACTTTTATCTTCAGGTTATGATACCTGAGGCTTTTGCCATTGTCACGACTCCAACTGATACCTCAAGGTATGCAGCAACACTAAATACAAAGTTCAGTCGTTATGCTTTAAACAAAATTTGGCAATTTCATCGTCGTAGTGTTAGATTCAAAAGTCTTAAATGCTCAATCTCCTTCCATCTATATTTCGGCTCACAAGCTTTAGATGCTGTCTTTCATTCCCTTGGTGTTGTCCTTGCCTCTGTTCTTGTAGCATCTTCGATCTTCGACAACAATGGAAGCACCCTTGGTTGTGGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070536 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

JAB

Protein Analysis

187

Amino Acids

20.72

Weight (kDa)

9.04

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028281)

Species	Orthologous Gene IDs
malus_domestica	MD13G1092600.v1.1
pyrus_communis	pycom13g08050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	1 cut(s)	375
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	409
AluBI	AGCT	2 cut(s)	35, 458
AluI	AGCT	2 cut(s)	35, 458
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	2 cut(s)	194, 332
ApoI	RAATTY	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	216
AxyI	CCTNAGG	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	229
BbvI	GCAGC	2 cut(s)	206, 344
BccI	CCATC	1 cut(s)	444
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	97
BfoI	RGCGCY	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	104
BisI	GCNGC	2 cut(s)	195, 333
BlsI	GCNGC	2 cut(s)	196, 334
Bme1390I	CCNGG	1 cut(s)	216
BmiI	GGNNCC	3 cut(s)	112, 186, 211
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	454, 521
Bpu10I	CCTNAGC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	4 cut(s)	188, 214, 481, 544
Bse21I	CCTNAGG	1 cut(s)	285
BseDI	CCNNGG	4 cut(s)	188, 214, 481, 544
BseMII	CTCAG	2 cut(s)	243, 276
BseXI	GCAGC	2 cut(s)	206, 344
BshFI	GGCC	1 cut(s)	555
BshNI	GGYRCC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	216
BsnI	GGCC	1 cut(s)	555
Bsp143I	GATC	2 cut(s)	58, 519
Bsp19I	CCATGG	1 cut(s)	188
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	2 cut(s)	242, 277
BspLI	GGNNCC	3 cut(s)	112, 186, 211
BspMAI	CTGCAG	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	110
BssECI	CCNNGG	4 cut(s)	188, 214, 481, 544
BssMI	GATC	2 cut(s)	58, 519
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	3 cut(s)	188, 481, 544
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	229, 285
BstDSI	CCRYGG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	61, 522
BstMBI	GATC	2 cut(s)	58, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	206, 344
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	113
CviAII	CATG	2 cut(s)	62, 189
CviJI	RGCY	5 cut(s)	35, 290, 450, 458, 555
CviKI_1	RGCY	5 cut(s)	35, 290, 450, 458, 555
DdeI	CTNAG	2 cut(s)	229, 285
DinI	GGCGCC	1 cut(s)	112
DpnI	GATC	2 cut(s)	60, 521
DpnII	GATC	2 cut(s)	58, 519
DraI	TTTAAA	1 cut(s)	369
EaeI	YGGCCR	1 cut(s)	553
Eco130I	CCWWGG	3 cut(s)	188, 481, 544
Eco57I	CTGAAG	1 cut(s)	254
Eco81I	CCTNAGG	1 cut(s)	285
EcoT14I	CCWWGG	3 cut(s)	188, 481, 544
EgeI	GGCGCC	1 cut(s)	112
EheI	GGCGCC	1 cut(s)	112
ErhI	CCWWGG	3 cut(s)	188, 481, 544
FaeI	CATG	2 cut(s)	65, 192
FatI	CATG	2 cut(s)	61, 188
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	195, 333
Fsp4HI	GCNGC	2 cut(s)	195, 333
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	2 cut(s)	195, 333
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	555
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	65, 192
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	3 cut(s)	103, 307, 405
HpaII	CCGG	1 cut(s)	216
Hpy188III	TCNNGA	2 cut(s)	182, 304
Hpy99I	CGWCG	1 cut(s)	396
HpyAV	CCTTC	2 cut(s)	76, 442
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	3 cut(s)	20, 99, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	2 cut(s)	229, 285
HpySE526I	ACGT	1 cut(s)	28
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	65, 192
HspAI	GCGC	1 cut(s)	111
KasI	GGCGCC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	58, 519
LpnPI	CCDG	7 cut(s)	85, 109, 167, 192, 229, 257, 297
Lsp1109I	GCAGC	2 cut(s)	206, 344
LweI	GCATC	2 cut(s)	454, 521
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	60, 521
MboI	GATC	2 cut(s)	58, 519
MboII	GAAGA	4 cut(s)	165, 260, 507, 514
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	2 cut(s)	375, 383
MluNI	TGGCCA	1 cut(s)	555
Mly113I	GGCGCC	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	2 cut(s)	282, 335
MnlI	CCTC	4 cut(s)	238, 280, 331, 508
Mox20I	TGGCCA	1 cut(s)	555
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	3 cut(s)	41, 368, 417
Msp20I	TGGCCA	1 cut(s)	555
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	464
NarI	GGCGCC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	216
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	2 cut(s)	58, 519
NlaIII	CATG	2 cut(s)	65, 192
NlaIV	GGNNCC	3 cut(s)	112, 186, 211
NmuCI	GTSAC	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	103, 405
PkrI	GCNGC	2 cut(s)	196, 334
PleI	GAGTC	1 cut(s)	301
PluTI	GGCGCC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	112, 186, 211
PstI	CTGCAG	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	41, 368, 417
SatI	GCNGC	2 cut(s)	195, 333
Sau3AI	GATC	2 cut(s)	58, 519
SbfI	CCTGCAGG	1 cut(s)	101
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	216
SdaI	CCTGCAGG	1 cut(s)	101
SetI	ASST	8 cut(s)	31, 37, 98, 276, 286, 323, 329, 460
SfaNI	GCATC	2 cut(s)	454, 521
SfcI	CTRYAG	1 cut(s)	97
SfoI	GGCGCC	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse8387I	CCTGCAGG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	375, 383
SspDI	GGCGCC	1 cut(s)	110
SspI	AATATT	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	3 cut(s)	188, 481, 544
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	518, 525
TasI	AATT	2 cut(s)	375, 383
TfiI	GAWTC	2 cut(s)	103, 405
Tru1I	TTAA	3 cut(s)	41, 368, 417
Tru9I	TTAA	3 cut(s)	41, 368, 417
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	2 cut(s)	194, 332
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	4 cut(s)	133, 165, 377, 464
TspRI	CASTG	1 cut(s)	159
XapI	RAATTY	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.