Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0024244

Physical Location & Seq

Genomic Coordinates Reverse (-)

6817148 .. 6818639

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1096400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTTGGGATGCTTGCCTTGGTCCGAGGGGCGAGCGTTGTATACCGGGTGTTTCATGAGGTATTCAGACAAAGATTTTCTTAACAAGGAAATGGGAAATGGAAGCTCCAGAGATTACCGGACTGCTAAAGAATTTCGGGGTTTTGCAGGATCATATGATGCGAAGAAACGGGCGAAAACCCTAAACGACAGTAACTTAAACTTCAAGTACTCAACAATCGAAAAGGTCACGGGGTGTTTTGACATTGTCAACAAGCTTGGACAAGGAGGTTTCGGAACTGTTTATAAGGGAGTTCTGGCCGATGGGAAGGAGATTGCAGTGAAGAGGCTTTTCTTCAACACCAGACACAGAGCAGCAGATTTCTACAATGAAATCAACATTATAAGCAGAGTGGAACACAAAAACTTGGTCAGGTTGTTGGGCTGCAGTTGCTCGGGACCTGAAAGCCTTCTTGTCTATGAATACCTACCGAACAGTGTAAAGATGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0010035 GO:0010193 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046677 GO:0046777 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

164

Amino Acids

18.47

Weight (kDa)

9.27

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	81 - 158	9.3e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	82 - 158	6.5e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024244)

Species	Orthologous Gene IDs
malus_domestica	MD13G1096400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0057371
rosa_roxburghii	Rroxscaffold_2G00084080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	285, 383
AccI	GTMKAC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	131
AdeI	CACNNNGTG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	205, 337
AluBI	AGCT	2 cut(s)	105, 256
AluI	AGCT	2 cut(s)	105, 256
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	353, 423
ApoI	RAATTY	1 cut(s)	131
ArsI	GACNNNNNNTTYG	2 cut(s)	393, 425
Asp700I	GAANNNNTTC	1 cut(s)	447
AspS9I	GGNCC	2 cut(s)	21, 437
AsuC2I	CCSGG	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	2 cut(s)	21, 437
BbvI	GCAGC	2 cut(s)	365, 410
BccI	CCATC	1 cut(s)	296
BcnI	CCSGG	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	424
BisI	GCNGC	2 cut(s)	354, 424
BlsI	GCNGC	2 cut(s)	355, 425
BmcAI	AGTACT	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	2 cut(s)	21, 437
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	21, 437
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	17, 24
BsaWI	WCCGGW	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	17, 24
BseGI	GGATG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	365, 410
BshFI	GGCC	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	45, 118
BslFI	GGGAC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	299
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	438
BspMAI	CTGCAG	1 cut(s)	428
BspPI	GGATC	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	17, 24
BssMI	GATC	1 cut(s)	149
BssNAI	GTATAC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	17
Bst1107I	GTATAC	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	191, 280, 476
Bst6I	CTCTTC	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	14, 33
BstF5I	GGATG	1 cut(s)	14
BstKTI	GATC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	365, 410
BstZ17I	GTATAC	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	324, 481
Cac8I	GCNNGC	2 cut(s)	14, 33
CciI	TCATGA	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	21, 437
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	6 cut(s)	105, 256, 299, 328, 423, 447
CviKI_1	RGCY	6 cut(s)	105, 256, 299, 328, 423, 447
CviQI	GTAC	1 cut(s)	208
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
DraIII	CACNNNGTG	1 cut(s)	234
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	21, 437
Eco88I	CYCGRG	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	1 cut(s)	58
FaiI	YATR	7 cut(s)	42, 56, 154, 156, 285, 383, 459
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	1 cut(s)	54
FauNDI	CATATG	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	2 cut(s)	354, 424
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	2 cut(s)	354, 424
GluI	GCNGC	2 cut(s)	354, 424
GsuI	CTGGAG	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	2 cut(s)	45, 118
Hin1II	CATG	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	254
HpaII	CCGG	2 cut(s)	45, 118
Hpy166II	GTNNAC	2 cut(s)	42, 250
Hpy188I	TCNGA	3 cut(s)	25, 67, 275
Hpy188III	TCNNGA	3 cut(s)	55, 108, 435
Hpy8I	GTNNAC	2 cut(s)	42, 250
HpyAV	CCTTC	2 cut(s)	301, 458
HpyCH4III	ACNGT	3 cut(s)	191, 280, 476
HpyCH4V	TGCA	3 cut(s)	146, 317, 426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	429
Hsp92II	CATG	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	8 cut(s)	58, 121, 131, 132, 281, 355, 397, 453
Lsp1109I	GCAGC	2 cut(s)	365, 410
LweI	GCATC	1 cut(s)	148
MaeIII	GTNAC	2 cut(s)	191, 226
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	3 cut(s)	175, 325, 334
MluCI	AATT	1 cut(s)	131
MnlI	CCTC	4 cut(s)	19, 51, 260, 318
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	2 cut(s)	81, 197
MspI	CCGG	2 cut(s)	45, 118
MspR9I	CCNGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	429
NciI	CCSGG	1 cut(s)	46
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	438
NmuCI	GTSAC	1 cut(s)	226
PagI	TCATGA	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	447
PflFI	GACNNNGTC	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	355, 425
PpuMI	RGGWCCY	1 cut(s)	437
PsiI	TTATAA	2 cut(s)	285, 383
Psp5II	RGGWCCY	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	2 cut(s)	21, 437
PspPPI	RGGWCCY	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	428
PsyI	GACNNNGTC	1 cut(s)	245
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	81, 197
SatI	GCNGC	2 cut(s)	354, 424
Sau3AI	GATC	1 cut(s)	149
Sau96I	GGNCC	2 cut(s)	21, 437
ScaI	AGTACT	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	46
SetI	ASST	8 cut(s)	62, 107, 228, 258, 271, 416, 442, 468
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	424
SinI	GGWCC	2 cut(s)	21, 437
Sse9I	AATT	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	3 cut(s)	191, 280, 476
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	131
TatI	WGTACW	1 cut(s)	207
Tru1I	TTAA	2 cut(s)	81, 197
Tru9I	TTAA	2 cut(s)	81, 197
TscAI	CASTG	2 cut(s)	324, 481
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	353, 423
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	43, 384, 474
TspRI	CASTG	2 cut(s)	324, 481
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	21, 437
XapI	RAATTY	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	447
ZrmI	AGTACT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.