Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0028233

Physical Location & Seq

Genomic Coordinates Reverse (-)

11060518 .. 11060838

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1142600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGTAAAGGATCCTATTATGTACAAGAATATTTGGAGGATTGACAACTTCTCAAAGCTGGACGACGAATCATACGACTCAAAAGTATTCACTGCCGGAGACCAGAAATGGTATGTAACCCTAAACTTGTTAGACTTCGCTTCCTGTATAAGAAATTTCTCTTGCAGACATCGGAAACTTAAGCAGAGTCAAGTAAAAGTTTTGCAAATGTGTTGGTTGTTTTGTAGGAAGATACAGCTCTATCCCAAGGGAAAAGGCAATGGAGTTGGTACCCATCTAGCTTTATATAGCATTAGCCGAACCGAATCCTCTTCCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

107

Amino Acids

12.38

Weight (kDa)

9.51

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0028233)

Species	Orthologous Gene IDs
malus_domestica	MD13G1142600.v1.1
pyrus_communis	pycom13g12420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	269
AclWI	GGATC	2 cut(s)	5, 18
AcsI	RAATTY	1 cut(s)	154
AfaI	GTAC	2 cut(s)	23, 271
AflII	CTTAAG	1 cut(s)	179
AluBI	AGCT	3 cut(s)	58, 238, 281
AluI	AGCT	3 cut(s)	58, 238, 281
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	5, 18
ApoI	RAATTY	1 cut(s)	154
Asp718I	GGTACC	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	269
BccI	CCATC	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	2 cut(s)	278, 319
BfrI	CTTAAG	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	12, 271
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	265
BshNI	GGYRCC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	93
Bso31I	GGTCTC	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	12, 271
BspPI	GGATC	2 cut(s)	5, 18
BspT107I	GGYRCC	1 cut(s)	269
BspTI	CTTAAG	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	265
BsrGI	TGTACA	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	316
BstAFI	CTTAAG	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	21
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	22, 270
CviJI	RGCY	4 cut(s)	58, 238, 281, 297
CviKI_1	RGCY	4 cut(s)	58, 238, 281, 297
CviQI	GTAC	2 cut(s)	22, 270
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaiI	YATR	6 cut(s)	20, 73, 114, 149, 286, 288
FspBI	CTAG	2 cut(s)	278, 319
HapII	CCGG	1 cut(s)	96
HinfI	GANTC	4 cut(s)	68, 77, 187, 305
HpaII	CCGG	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	174
Hpy99I	CGWCG	1 cut(s)	68
HpyCH4V	TGCA	2 cut(s)	165, 205
KpnI	GGTACC	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	4 cut(s)	44, 109, 116, 157
MaeI	CTAG	2 cut(s)	278, 319
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	2 cut(s)	241, 303
MflI	RGATCY	1 cut(s)	10
MluCI	AATT	1 cut(s)	154
MlyI	GAGTC	2 cut(s)	71, 196
MnlI	CCTC	2 cut(s)	30, 319
MseI	TTAA	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	10
NlaIV	GGNNCC	2 cut(s)	12, 271
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	68, 305
PleI	GAGTC	2 cut(s)	71, 195
PpsI	GAGTC	2 cut(s)	71, 195
PspN4I	GGNNCC	2 cut(s)	12, 271
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	2 cut(s)	23, 271
RsaNI	GTAC	2 cut(s)	22, 270
SaqAI	TTAA	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	10
SchI	GAGTC	2 cut(s)	71, 196
SetI	ASST	3 cut(s)	60, 240, 283
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	154
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	2 cut(s)	278, 319
StyI	CCWWGG	1 cut(s)	246
TasI	AATT	1 cut(s)	154
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	2 cut(s)	68, 305
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	97
TspRI	CASTG	1 cut(s)	97
Vha464I	CTTAAG	1 cut(s)	179
XapI	RAATTY	1 cut(s)	154
XspI	CTAG	2 cut(s)	278, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.