Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0028274

Physical Location & Seq

Genomic Coordinates Forward (+)

12547560 .. 12549869

Gene Structure 2310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1159500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGACTCGAGCTCCAGGAACAGGCCTCCGATCTTGGTCCTCAATCTTCTCCATATTTTCACGATCCTCTCCTTCTCACTCGCCCAATCCACCGCCCAAGCTCCGTCGCCGGCCTCCGATTCCTGCAACGGCGACTTCCTGCCGTACGCCTACACCACCGGAGCCCGAGGTCAAAGACCCGTCCCAGCAGCCCTACCGGTTCGAGTCGGTGCTCAACAACGGACTCGACGATCTCAAGTCGTGGAGGGTTTGTGGGGTTTACTAACAATGAGTACTTGGTCTCTGCCTCCAATACCGGTTTGGCCGACGGGGGTAGCATTCCTGGGAGTGTGGGAAACGGCACCGTCTTTGCTGGGTATCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0031224 GO:0031225 GO:0031226 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048364 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0071695 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

122

Amino Acids

13.06

Weight (kDa)

10.65

Isoelectric Point (pI)

71.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028274)

Species	Orthologous Gene IDs
malus_domestica	MD13G1159500.v1.1
pyrus_communis	pycom13g13590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	340
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	302
AfaI	GTAC	2 cut(s)	146, 274
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgeI	ACCGGT	2 cut(s)	196, 295
AjnI	CCWGG	2 cut(s)	14, 321
AluBI	AGCT	2 cut(s)	12, 101
AluI	AGCT	2 cut(s)	12, 101
Alw21I	GWGCWC	2 cut(s)	14, 214
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	58
Ama87I	CYCGRG	2 cut(s)	7, 165
AoxI	GGCC	3 cut(s)	23, 111, 302
ApeKI	GCWGC	1 cut(s)	188
AsiGI	ACCGGT	2 cut(s)	196, 295
AspS9I	GGNCC	1 cut(s)	37
AvaI	CYCGRG	2 cut(s)	7, 165
AvaII	GGWCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	340
BanII	GRGCYC	2 cut(s)	14, 166
Bbv12I	GWGCWC	2 cut(s)	14, 214
BbvI	GCAGC	1 cut(s)	200
BceAI	ACGGC	3 cut(s)	127, 145, 354
BciT130I	CCWGG	2 cut(s)	16, 323
BcoDI	GTCTC	1 cut(s)	285
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	2 cut(s)	16, 323
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	2 cut(s)	7, 165
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	163, 342
BmrFI	CCNGG	2 cut(s)	16, 323
BpuEI	CTTGAG	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	166, 322
BsaWI	WCCGGW	3 cut(s)	158, 196, 295
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse118I	RCCGGY	3 cut(s)	109, 196, 295
BseBI	CCWGG	2 cut(s)	16, 323
BseDI	CCNNGG	2 cut(s)	166, 322
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	200
BseYI	CCCAGC	2 cut(s)	184, 352
BshFI	GGCC	3 cut(s)	25, 113, 304
BshNI	GGYRCC	1 cut(s)	340
BshTI	ACCGGT	2 cut(s)	196, 295
BsiHKAI	GWGCWC	2 cut(s)	14, 214
BsiHKCI	CYCGRG	2 cut(s)	7, 165
BsiSI	CCGG	4 cut(s)	110, 159, 197, 296
BsiWI	CGTACG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	3 cut(s)	25, 113, 304
Bso31I	GGTCTC	1 cut(s)	285
BsoBI	CYCGRG	2 cut(s)	7, 165
Bsp1286I	GDGCHC	3 cut(s)	14, 166, 214
Bsp143I	GATC	3 cut(s)	30, 63, 230
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	3 cut(s)	25, 113, 304
BspLI	GGNNCC	2 cut(s)	163, 342
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	285
BsrFI	RCCGGY	3 cut(s)	109, 196, 295
BssAI	RCCGGY	3 cut(s)	109, 196, 295
BssECI	CCNNGG	2 cut(s)	166, 322
BssMI	GATC	3 cut(s)	30, 63, 230
Bst2UI	CCWGG	2 cut(s)	16, 323
Bst4CI	ACNGT	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	111
BstKTI	GATC	3 cut(s)	33, 66, 233
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	3 cut(s)	30, 63, 230
BstNI	CCWGG	2 cut(s)	16, 323
BstSCI	CCNGG	2 cut(s)	14, 321
BstV1I	GCAGC	1 cut(s)	200
BsuRI	GGCC	3 cut(s)	25, 113, 304
Cac8I	GCNNGC	1 cut(s)	111
Cfr10I	RCCGGY	3 cut(s)	109, 196, 295
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	145, 273
CspAI	ACCGGT	2 cut(s)	196, 295
CviJI	RGCY	7 cut(s)	12, 25, 101, 113, 164, 191, 304
CviKI_1	RGCY	7 cut(s)	12, 25, 101, 113, 164, 191, 304
CviQI	GTAC	2 cut(s)	145, 273
DpnI	GATC	3 cut(s)	32, 65, 232
DpnII	GATC	3 cut(s)	30, 63, 230
EaeI	YGGCCR	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	25
Eco24I	GRGCYC	2 cut(s)	14, 166
Eco31I	GGTCTC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	12
Eco88I	CYCGRG	2 cut(s)	7, 165
EcoICRI	GAGCTC	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	14, 321
EcoT38I	GRGCYC	2 cut(s)	14, 166
FaiI	YATR	1 cut(s)	54
FaqI	GGGAC	1 cut(s)	167
Fnu4HI	GCNGC	1 cut(s)	189
FriOI	GRGCYC	2 cut(s)	14, 166
Fsp4HI	GCNGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	2 cut(s)	188, 356
HaeIII	GGCC	3 cut(s)	25, 113, 304
HapII	CCGG	4 cut(s)	110, 159, 197, 296
HinfI	GANTC	4 cut(s)	5, 119, 204, 223
HpaII	CCGG	4 cut(s)	110, 159, 197, 296
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	3 cut(s)	30, 118, 362
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	260
Hpy99I	CGWCG	3 cut(s)	109, 231, 310
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	126
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	30, 63, 230
LmnI	GCTCC	3 cut(s)	17, 106, 161
Lsp1109I	GCAGC	1 cut(s)	200
MalI	GATC	3 cut(s)	32, 65, 232
MboI	GATC	3 cut(s)	30, 63, 230
MboII	GAAGA	1 cut(s)	38
MhlI	GDGCHC	3 cut(s)	14, 166, 214
MlyI	GAGTC	2 cut(s)	213, 217
MnlI	CCTC	7 cut(s)	36, 50, 77, 124, 161, 238, 297
MroNI	GCCGGC	1 cut(s)	109
MspI	CCGG	4 cut(s)	110, 159, 197, 296
MspR9I	CCNGG	2 cut(s)	16, 323
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	2 cut(s)	16, 323
NaeI	GCCGGC	1 cut(s)	111
NdeII	GATC	3 cut(s)	30, 63, 230
NgoMIV	GCCGGC	1 cut(s)	109
NlaIV	GGNNCC	2 cut(s)	163, 342
PaeR7I	CTCGAG	1 cut(s)	7
PceI	AGGCCT	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PctI	GAATGC	1 cut(s)	317
PdiI	GCCGGC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	119
Pfl23II	CGTACG	1 cut(s)	144
PfoI	TCCNGGA	1 cut(s)	14
PinAI	ACCGGT	2 cut(s)	196, 295
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	2 cut(s)	212, 217
PpsI	GAGTC	2 cut(s)	212, 217
Psp124BI	GAGCTC	1 cut(s)	14
Psp6I	CCWGG	2 cut(s)	14, 321
PspFI	CCCAGC	2 cut(s)	184, 352
PspGI	CCWGG	2 cut(s)	14, 321
PspLI	CGTACG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	163, 342
PspPI	GGNCC	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	7
RsaI	GTAC	2 cut(s)	146, 274
RsaNI	GTAC	2 cut(s)	145, 273
SacI	GAGCTC	1 cut(s)	14
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	30, 63, 230
Sau96I	GGNCC	1 cut(s)	37
ScaI	AGTACT	1 cut(s)	274
SchI	GAGTC	2 cut(s)	213, 217
ScrFI	CCNGG	2 cut(s)	16, 323
SduI	GDGCHC	3 cut(s)	14, 166, 214
SetI	ASST	3 cut(s)	14, 103, 172
Sfr274I	CTCGAG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	7
SmlI	CTYRAG	2 cut(s)	7, 234
SmoI	CTYRAG	2 cut(s)	7, 234
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	14
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	14, 321
TaaI	ACNGT	1 cut(s)	345
TaqI	TCGA	3 cut(s)	8, 202, 226
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	188
TspGWI	ACGGA	2 cut(s)	93, 235
VpaK11BI	GGWCC	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	297
XhoI	CTCGAG	1 cut(s)	7
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.