Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0028261

Physical Location & Seq

Genomic Coordinates Forward (+)

26484716 .. 26485575

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1249200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGCTAGACATGAGAAATAAGGGCTTCAAGCCTAATGAAACATCATATTCATTGATGATCAACTGTCATGCCAAAGGAGGGAATGTCAAGGGGATCGAGAGTATTGAGAGAGAAATTTATGGCTATCATATTTTCCCCAGTTGGATTCTTTTGAGAACTCTTATTCTTGCGAATTTCAAGTGCAGAGCACTGGACGGCATGGAGAGGGCATTCCATCAATTGAAAAACAACGGATACAAACCTGACTTGGTTGTATTCAACGCTATCCTTTCAATTTTTGCTAGAAACAACATGTATGATCGGGCCAATGACATGTTGTACATGATTCATGAAAACGGCCTTCAGCCAGATCTCGTAACTTACAATAGCTTGATGGACATGTACACCAGAAAGGGAGAGTGTTGGAAAGCAGAAGAAATCCTCATGGCCATACAAAAATCTGGTGGGAAACCAGACCTCGTCTCTTATAACACAGTCATCAAAGGGTTTTGCAGGCAAGGGTACATGCAGGAGGCCATAAGAATTCTCTCTGAGATGACAACTAGGGGGTTTCGACCATGTATTTTCACCTACAATACTTTCATCACAGGCTATGCAGGGCTGGGAATGTTATCAGAAATAGATGAAGTGATTAGCTATATGACTCAGAACAATTGCAGGCCAAATGAGCTAAGCTACAAGATTGCTGCGGATGGTTATTGTAAAGCGAGAAAATATAAAGAAGCCATGGACTTTCTGTCGAAGATTAAGGAAATTGATACTTCTTTTGATGGTCAATATGTGCAAAGACTTGCTTCTCGCATTCGGGGCAAATGCATGAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

276

Amino Acids

31.77

Weight (kDa)

8.87

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	71 - 128	1e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	81 - 128	1.2e-08	PPR repeat family
PPR_3	PF13812	110 - 163	7.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	112 - 141	1e-05	PPR repeat
PPR_2	PF13041	116 - 165	8.1e-12	PPR repeat family
PPR_1	PF12854	148 - 180	4.6e-12	PPR repeat
PPR_2	PF13041	151 - 186	1.9e-10	PPR repeat family
PPR	PF01535	154 - 184	1.2e-08	PPR repeat
PPR_3	PF13812	174 - 226	2.8e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	186 - 235	2.8e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0028261)

Species	Orthologous Gene IDs
malus_domestica	MD13G1249200.v1.1
pyrus_communis	pycom16g21680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	468
AciI	CCGC	1 cut(s)	689
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	3 cut(s)	114, 172, 522
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	3 cut(s)	320, 383, 503
AfiI	CCNNNNNNNGG	1 cut(s)	78
AflIII	ACRYGT	3 cut(s)	291, 312, 378
AgsI	TTSAA	5 cut(s)	28, 178, 223, 259, 273
AhdI	GACNNNNNGTC	1 cut(s)	736
AluBI	AGCT	4 cut(s)	369, 636, 670, 675
AluI	AGCT	4 cut(s)	369, 636, 670, 675
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	5 cut(s)	303, 337, 426, 513, 659
ApeKI	GCWGC	1 cut(s)	686
ApoI	RAATTY	3 cut(s)	114, 172, 522
AspS9I	GGNCC	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	559
BalI	TGGCCA	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	673
BccI	CCATC	4 cut(s)	222, 367, 686, 764
BceAI	ACGGC	2 cut(s)	211, 352
BciVI	GTATCC	1 cut(s)	227
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	3 cut(s)	5, 282, 543
BfuI	GTATCC	1 cut(s)	227
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	1 cut(s)	687
BlpI	GCTNAGC	1 cut(s)	671
BlsI	GCNGC	1 cut(s)	688
BmeRI	GACNNNNNGTC	1 cut(s)	736
BmgT120I	GGNCC	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
Bpu1102I	GCTNAGC	1 cut(s)	671
BsaJI	CCNNGG	1 cut(s)	726
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	138, 195
BseDI	CCNNGG	1 cut(s)	726
BseGI	GGATG	1 cut(s)	697
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	522, 659
BseNI	ACTGG	2 cut(s)	138, 195
BseXI	GCAGC	1 cut(s)	673
BseYI	CCCAGC	1 cut(s)	601
BsgI	GTGCAG	1 cut(s)	202
BshFI	GGCC	5 cut(s)	305, 339, 428, 515, 661
BsiHKAI	GWGCWC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	466
BsmBI	CGTCTC	1 cut(s)	466
BsmI	GAATGC	2 cut(s)	209, 801
BsnI	GGCC	5 cut(s)	305, 339, 428, 515, 661
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp1407I	TGTACA	2 cut(s)	318, 381
Bsp143I	GATC	4 cut(s)	57, 93, 298, 349
Bsp1720I	GCTNAGC	1 cut(s)	671
Bsp19I	CCATGG	1 cut(s)	726
BspACI	CCGC	1 cut(s)	689
BspANI	GGCC	5 cut(s)	305, 339, 428, 515, 661
BspCNI	CTCAG	2 cut(s)	523, 658
BspHI	TCATGA	1 cut(s)	328
BspPI	GGATC	1 cut(s)	101
BsrGI	TGTACA	2 cut(s)	318, 381
BsrI	ACTGG	2 cut(s)	138, 195
BssECI	CCNNGG	1 cut(s)	726
BssMI	GATC	4 cut(s)	57, 93, 298, 349
BssT1I	CCWWGG	1 cut(s)	726
Bst4CI	ACNGT	2 cut(s)	65, 475
BstAUI	TGTACA	2 cut(s)	318, 381
BstC8I	GCNNGC	2 cut(s)	494, 659
BstDEI	CTNAG	3 cut(s)	531, 645, 671
BstDSI	CCRYGG	1 cut(s)	726
BstF5I	GGATG	1 cut(s)	697
BstKTI	GATC	4 cut(s)	60, 96, 301, 352
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	4 cut(s)	57, 93, 298, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	667, 807
BstNSI	RCATGY	4 cut(s)	295, 316, 382, 508
BstV1I	GCAGC	1 cut(s)	673
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuI	GTATCC	1 cut(s)	227
BsuRI	GGCC	5 cut(s)	305, 339, 428, 515, 661
BtgI	CCRYGG	1 cut(s)	726
BtsCI	GGATG	1 cut(s)	697
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	494, 659
CciI	TCATGA	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	303
Csp6I	GTAC	3 cut(s)	319, 382, 502
CviQI	GTAC	3 cut(s)	319, 382, 502
DdeI	CTNAG	3 cut(s)	531, 645, 671
DpnI	GATC	4 cut(s)	59, 95, 300, 351
DpnII	GATC	4 cut(s)	57, 93, 298, 349
DriI	GACNNNNNGTC	1 cut(s)	736
EaeI	YGGCCR	1 cut(s)	426
Eam1105I	GACNNNNNGTC	1 cut(s)	736
Eco130I	CCWWGG	1 cut(s)	726
Eco57I	CTGAAG	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	726
EcoT22I	ATGCAT	1 cut(s)	818
ErhI	CCWWGG	1 cut(s)	726
Esp3I	CGTCTC	1 cut(s)	466
FalI	AAGNNNNNCTT	2 cut(s)	778, 810
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	687
FokI	GGATG	1 cut(s)	704
Fsp4HI	GCNGC	1 cut(s)	687
FspBI	CTAG	3 cut(s)	5, 282, 543
GluI	GCNGC	1 cut(s)	687
GsaI	CCCAGC	1 cut(s)	605
HaeIII	GGCC	5 cut(s)	305, 339, 428, 515, 661
HinfI	GANTC	3 cut(s)	145, 325, 643
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	3 cut(s)	532, 616, 648
Hpy188III	TCNNGA	2 cut(s)	97, 329
Hpy8I	GTNNAC	1 cut(s)	384
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	2 cut(s)	65, 475
HpyCH4V	TGCA	7 cut(s)	183, 492, 508, 596, 657, 784, 816
HpyF10VI	GCNNNNNNNGC	2 cut(s)	667, 807
HpyF3I	CTNAG	3 cut(s)	531, 645, 671
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	4 cut(s)	57, 93, 298, 349
Lsp1109I	GCAGC	1 cut(s)	673
MaeI	CTAG	3 cut(s)	5, 282, 543
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	4 cut(s)	59, 95, 300, 351
MboI	GATC	4 cut(s)	57, 93, 298, 349
MboII	GAAGA	2 cut(s)	425, 754
MfeI	CAATTG	2 cut(s)	218, 652
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	8 cut(s)	114, 172, 218, 273, 522, 652, 753, 820
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	637
MmeI	TCCRAC	2 cut(s)	122, 383
MnlI	CCTC	5 cut(s)	71, 198, 431, 467, 505
Mox20I	TGGCCA	1 cut(s)	428
Mph1103I	ATGCAT	1 cut(s)	818
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	1 cut(s)	747
Msp20I	TGGCCA	1 cut(s)	428
MunI	CAATTG	2 cut(s)	218, 652
Mva1269I	GAATGC	2 cut(s)	209, 801
MwoI	GCNNNNNNNGC	2 cut(s)	667, 807
NcoI	CCATGG	1 cut(s)	726
NdeII	GATC	4 cut(s)	57, 93, 298, 349
NsiI	ATGCAT	1 cut(s)	818
NspI	RCATGY	4 cut(s)	295, 316, 382, 508
PagI	TCATGA	1 cut(s)	328
PciI	ACATGT	3 cut(s)	291, 312, 378
PctI	GAATGC	2 cut(s)	209, 801
PfeI	GAWTC	2 cut(s)	145, 325
PflFI	GACNNNGTC	1 cut(s)	458
PkrI	GCNGC	1 cut(s)	688
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
PscI	ACATGT	3 cut(s)	291, 312, 378
PsiI	TTATAA	1 cut(s)	468
PspFI	CCCAGC	1 cut(s)	601
PspPI	GGNCC	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	349
PsyI	GACNNNGTC	1 cut(s)	458
RsaI	GTAC	3 cut(s)	320, 383, 503
RsaNI	GTAC	3 cut(s)	319, 382, 502
SaqAI	TTAA	1 cut(s)	747
SatI	GCNGC	1 cut(s)	687
Sau3AI	GATC	4 cut(s)	57, 93, 298, 349
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	1 cut(s)	637
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	7 cut(s)	244, 371, 459, 572, 638, 672, 677
Sse9I	AATT	8 cut(s)	114, 172, 218, 273, 522, 652, 753, 820
SsiI	CCGC	1 cut(s)	689
SspMI	CTAG	3 cut(s)	5, 282, 543
StyI	CCWWGG	1 cut(s)	726
TaaI	ACNGT	2 cut(s)	65, 475
TaqI	TCGA	3 cut(s)	96, 553, 740
TasI	AATT	8 cut(s)	114, 172, 218, 273, 522, 652, 753, 820
TatI	WGTACW	2 cut(s)	318, 381
TfiI	GAWTC	2 cut(s)	145, 325
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	1 cut(s)	686
TspDTI	ATGAA	6 cut(s)	39, 51, 317, 345, 571, 639
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	195
Tth111I	GACNNNGTC	1 cut(s)	458
XapI	RAATTY	3 cut(s)	114, 172, 522
XceI	RCATGY	4 cut(s)	295, 316, 382, 508
XspI	CTAG	3 cut(s)	5, 282, 543
Zsp2I	ATGCAT	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.