MD14G1064500.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0028346
Physical Location & Seq
Reverse (-)
6804639 .. 6805105
467 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1064500.v1.1.491

Sequence Viewer

Length: 372 bp
ATGTCTAACTGTCCAGTTCTTGAACGATTATCAGTGGACAACTCCAATGATTTGGTTAATTTAAGAGTAGTCATGTCGAGCGCACTGAAGTACATAGAGATACGAAAATGTTGCAAGATCGAGAGCATTAATATTTGTGGCGCAAATCTTGTATCGTTTTGTATCGGAGATCGGATAAACCTTCTTAGGAACGTACCGCAACTTGTAGATATATCCATCTGTGCTGATAATGATGGATTCATAGAGGCTGCCTTGAATCAACTTCCATGTTGGTTTTCTCAGCTGGAGACTCTCAAACTGGATGGAATACTGATGAACATGAAGTATTTCCTATGCTTGAAAATCTCAAGCATTTGGAGACATTTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

124

Amino Acids

13.92

Weight (kDa)

6.53

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 1 - 102 2.2e-09 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028346)

Species Orthologous Gene IDs
malus_domestica MD14G1064500.v1.1
pyrus_communis pycom14g05220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 2 cut(s) 92, 195
AgsI TTSAA 3 cut(s) 23, 256, 340
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw26I GTCTC 2 cut(s) 281, 352
ApeKI GCWGC 1 cut(s) 248
AseI ATTAAT 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 2 cut(s) 83, 143
BbvI GCAGC 1 cut(s) 235
BccI CCATC 3 cut(s) 224, 227, 296
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BcoDI GTCTC 2 cut(s) 281, 352
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 331
Bse1I ACTGG 2 cut(s) 14, 303
BseGI GGATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 2 cut(s) 14, 303
BseXI GCAGC 1 cut(s) 235
BsmAI GTCTC 2 cut(s) 281, 352
Bsp143I GATC 2 cut(s) 117, 169
BspACI CCGC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 292
BsrI ACTGG 2 cut(s) 14, 303
BssMI GATC 2 cut(s) 117, 169
Bst4CI ACNGT 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 185, 279
BstF5I GGATG 1 cut(s) 307
BstHHI GCGC 2 cut(s) 83, 143
BstKTI GATC 2 cut(s) 120, 172
BstMAI GTCTC 2 cut(s) 281, 352
BstMBI GATC 2 cut(s) 117, 169
BstV1I GCAGC 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 39, 83
CfoI GCGC 2 cut(s) 83, 143
Csp6I GTAC 2 cut(s) 91, 194
CviAII CATG 3 cut(s) 73, 267, 319
CviJI RGCY 2 cut(s) 248, 283
CviKI_1 RGCY 2 cut(s) 248, 283
CviQI GTAC 2 cut(s) 91, 194
DdeI CTNAG 2 cut(s) 185, 279
DpnI GATC 2 cut(s) 119, 171
DpnII GATC 2 cut(s) 117, 169
Eco57I CTGAAG 1 cut(s) 107
FaeI CATG 3 cut(s) 76, 270, 322
FaiI YATR 7 cut(s) 74, 95, 212, 242, 268, 320, 334
FatI CATG 3 cut(s) 72, 266, 318
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 249
GlaI GCGC 2 cut(s) 82, 142
GluI GCNGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 305
HhaI GCGC 2 cut(s) 83, 143
Hin1II CATG 3 cut(s) 76, 270, 322
Hin6I GCGC 2 cut(s) 81, 141
HinP1I GCGC 2 cut(s) 81, 141
HinfI GANTC 3 cut(s) 237, 256, 289
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 167, 174
Hpy188III TCNNGA 2 cut(s) 20, 121
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 114
HpyF3I CTNAG 2 cut(s) 185, 279
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 3 cut(s) 76, 270, 322
HspAI GCGC 2 cut(s) 81, 141
Kzo9I GATC 2 cut(s) 117, 169
LpnPI CCDG 3 cut(s) 27, 269, 284
Lsp1109I GCAGC 1 cut(s) 235
MaeII ACGT 1 cut(s) 192
MalI GATC 2 cut(s) 119, 171
MboI GATC 2 cut(s) 117, 169
MluCI AATT 1 cut(s) 58
MlyI GAGTC 1 cut(s) 283
MnlI CCTC 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 3 cut(s) 57, 62, 129
MspA1I CMGCKG 1 cut(s) 283
NdeII GATC 2 cut(s) 117, 169
NlaIII CATG 3 cut(s) 76, 270, 322
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 2 cut(s) 237, 256
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PshBI ATTAAT 1 cut(s) 129
PvuII CAGCTG 1 cut(s) 283
RsaI GTAC 2 cut(s) 92, 195
RsaNI GTAC 2 cut(s) 91, 194
SaqAI TTAA 3 cut(s) 57, 62, 129
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 2 cut(s) 117, 169
SchI GAGTC 1 cut(s) 283
SetI ASST 3 cut(s) 183, 195, 285
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 1 cut(s) 58
SsiI CCGC 1 cut(s) 197
SspI AATATT 1 cut(s) 133
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 77, 120
TasI AATT 1 cut(s) 58
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 2 cut(s) 237, 256
Tru1I TTAA 3 cut(s) 57, 62, 129
Tru9I TTAA 3 cut(s) 57, 62, 129
TscAI CASTG 2 cut(s) 39, 90
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 3 cut(s) 229, 329, 335
TspRI CASTG 2 cut(s) 39, 90
VspI ATTAAT 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.