Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0028324

Physical Location & Seq

Genomic Coordinates Reverse (-)

7263794 .. 7266079

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1066800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGACACTGAATACTTTCCATCTTGCCGAAAGAGGTGAAATGAATGTGACCCTAGGAATCCCTCGTCTTCAAGAGATTTTAATGACTGCTGCAAATGAGAGTAAGACTCCGGTTATGACATGTCCATTGCAAAAAGGGAGATCAAAGGAGGAAGCTCAGCATCTAGCTGATAAGCTGAAGAAGATCACTGTGGCAGACTTAGTAGAGAGTATGGAAGTTACTTTGTTGCCATATGTCCTTCAGGGTCTTGAAACTTGCCGTATTTATAAACTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005911 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

93

Amino Acids

10.37

Weight (kDa)

7.79

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_5	PF04998	1 - 59	1.4e-09	RNA polymerase Rpb1, domain 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0028324)

Species	Orthologous Gene IDs
malus_domestica	MD14G1066800.v1.1
pyrus_communis	pycom14g05420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AcuI	CTGAAG	2 cut(s)	197, 224
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	71, 251
AluBI	AGCT	3 cut(s)	155, 167, 175
AluI	AGCT	3 cut(s)	155, 167, 175
ApeKI	GCWGC	1 cut(s)	89
Asp700I	GAANNNNTTC	1 cut(s)	14
AspA2I	CCTAGG	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	47
AvrII	CCTAGG	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	27
BceAI	ACGGC	1 cut(s)	243
BfaI	CTAG	2 cut(s)	53, 164
BisI	GCNGC	1 cut(s)	90
BlnI	CCTAGG	1 cut(s)	52
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	91
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	59
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
Bpu1102I	GCTNAGC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	140, 183
Bsp1720I	GCTNAGC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	2 cut(s)	140, 183
BssT1I	CCWWGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	156, 199
BstKTI	GATC	2 cut(s)	143, 186
BstMBI	GATC	2 cut(s)	140, 183
BstNSI	RCATGY	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	5, 186
CviAII	CATG	1 cut(s)	120
CviJI	RGCY	3 cut(s)	155, 167, 175
CviKI_1	RGCY	3 cut(s)	155, 167, 175
DdeI	CTNAG	2 cut(s)	156, 199
DpnI	GATC	2 cut(s)	142, 185
DpnII	GATC	2 cut(s)	140, 183
Eco130I	CCWWGG	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	197, 224
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	1 cut(s)	123
FaiI	YATR	6 cut(s)	116, 121, 212, 232, 234, 267
FatI	CATG	1 cut(s)	119
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	53, 164
GluI	GCNGC	1 cut(s)	90
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	1 cut(s)	123
HinfI	GANTC	2 cut(s)	57, 106
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	47
Hpy188III	TCNNGA	2 cut(s)	71, 248
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	92, 130
HpyF3I	CTNAG	2 cut(s)	156, 199
Hsp92II	CATG	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	140, 183
LpnPI	CCDG	2 cut(s)	123, 227
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	53, 164
MaeIII	GTNAC	2 cut(s)	46, 217
MalI	GATC	2 cut(s)	142, 185
MboI	GATC	2 cut(s)	140, 183
MboII	GAAGA	3 cut(s)	59, 190, 193
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	3 cut(s)	26, 72, 142
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	2 cut(s)	80, 273
MspI	CCGG	1 cut(s)	110
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	2 cut(s)	140, 183
NlaIII	CATG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	123
PciI	ACATGT	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PscI	ACATGT	1 cut(s)	119
PsiI	TTATAA	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	80, 273
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	140, 183
SchI	GAGTC	1 cut(s)	100
SetI	ASST	4 cut(s)	37, 157, 169, 177
SfaNI	GCATC	1 cut(s)	169
SspMI	CTAG	2 cut(s)	53, 164
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	80, 273
Tru9I	TTAA	2 cut(s)	80, 273
TscAI	CASTG	2 cut(s)	12, 193
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	2 cut(s)	12, 193
XceI	RCATGY	1 cut(s)	123
XmaJI	CCTAGG	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	2 cut(s)	53, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.