Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0028342

Physical Location & Seq

Genomic Coordinates Reverse (-)

8549861 .. 8562691

Gene Structure 12831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1075500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCATTTGCTTTAGGGTCAATTAACTTTGCTGATTATGAGTGTGCTCATGTTGGCCTTCGTTGGAGCACATATGGCGGGTATGAGCATGAAGTAAAAGCTGAAAACCAACAATTGATTAGTGGGGTCTGGAGCTGTTCATTGGAAGTGGATTGTCGACTCGACAGTCATCATGTTTTTAACGTATGGATTAGCAATTCCTCAGAATGTGGTTCTCTTTGTCCACTTCTTACGGGACTCATTCGTATGGTTATCTCATTCATCATGGGGCTTATAAAGACAACAGCAAGTGCAAATTCTTTTCTTAAGAGCTTTTTCAGATTATCTCCAGGCTTTTGCTTTGCTGATGGACTTGCGTCACTGGCTCTTCTACAGCAAGATATGAAAGATAAATCCAGCAATCAGGCCTTTGGTTGGAATGTTACCGGTGGCTCAATTTGTTACCTTGGTATTGAGAGCATTTGTTACTTCCTTTTGACACTTGGGCTTGAACTCTTACTTTCTAACAAGTGGACACTACCCACACTGAAGGAATGTTGGAACAGCATTGGAAGTATCAAACATGGCACTCCAAGTTATCTAGAATCCCTTCTGAAGATTTCCTCAGATGTTGTTACTCTTGACCTTGATGAAGATAAAGACAGAAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

218

Amino Acids

24.0

Weight (kDa)

5.31

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	78 - 161	6.7e-07	ABC-2 family transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028342)

Species	Orthologous Gene IDs
malus_domestica	MD14G1075500.v1.1
pyrus_communis	pycom14g06410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AasI	GACNNNNNNGTC	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	157
AciI	CCGC	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	2 cut(s)	548, 614
AfiI	CCNNNNNNNGG	1 cut(s)	414
AflII	CTTAAG	1 cut(s)	305
AgeI	ACCGGT	1 cut(s)	425
AgsI	TTSAA	1 cut(s)	491
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	3 cut(s)	101, 135, 312
AluI	AGCT	3 cut(s)	101, 135, 312
Alw21I	GWGCWC	2 cut(s)	49, 71
AoxI	GGCC	2 cut(s)	55, 405
ApoI	RAATTY	1 cut(s)	295
AsiGI	ACCGGT	1 cut(s)	425
Asp700I	GAANNNNTTC	1 cut(s)	588
Bbv12I	GWGCWC	2 cut(s)	49, 71
BccI	CCATC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	330
BfaI	CTAG	2 cut(s)	581, 652
BfmI	CTRYAG	1 cut(s)	371
BfrI	CTTAAG	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	330
BoxI	GACNNNNGTC	1 cut(s)	355
BpmI	CTGGAG	2 cut(s)	151, 312
BsaJI	CCNNGG	1 cut(s)	445
BsaWI	WCCGGW	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	216, 618
BseNI	ACTGG	1 cut(s)	366
BshFI	GGCC	2 cut(s)	57, 407
BshTI	ACCGGT	1 cut(s)	425
BsiHKAI	GWGCWC	2 cut(s)	49, 71
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	414
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	57, 407
Bsp1286I	GDGCHC	2 cut(s)	49, 71
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	2 cut(s)	57, 407
BspCNI	CTCAG	2 cut(s)	215, 617
BspQI	GCTCTTC	1 cut(s)	372
BspTI	CTTAAG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	372
BstAFI	CTTAAG	1 cut(s)	305
BstDEI	CTNAG	2 cut(s)	202, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 362
BstNI	CCWGG	1 cut(s)	330
BstPAI	GACNNNNGTC	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	371
BsuRI	GGCC	2 cut(s)	57, 407
BtsIMutI	CAGTG	2 cut(s)	359, 524
Cfr10I	RCCGGY	1 cut(s)	425
CseI	GACGC	1 cut(s)	345
CspAI	ACCGGT	1 cut(s)	425
CviAII	CATG	5 cut(s)	50, 89, 173, 265, 563
DdeI	CTNAG	2 cut(s)	202, 604
DrdI	GACNNNNNNGTC	1 cut(s)	165
DseDI	GACNNNNNNGTC	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	445
Eco147I	AGGCCT	1 cut(s)	407
Eco57I	CTGAAG	2 cut(s)	548, 614
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	5 cut(s)	53, 92, 176, 268, 566
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	5 cut(s)	49, 88, 172, 264, 562
FauI	CCCGC	1 cut(s)	71
FauNDI	CATATG	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	157
FspBI	CTAG	2 cut(s)	581, 652
GsuI	CTGGAG	2 cut(s)	151, 312
HaeIII	GGCC	2 cut(s)	57, 407
HapII	CCGG	1 cut(s)	426
HgaI	GACGC	1 cut(s)	345
Hin1II	CATG	5 cut(s)	53, 92, 176, 268, 566
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HinfI	GANTC	3 cut(s)	159, 237, 584
HpaII	CCGG	1 cut(s)	426
Hpy166II	GTNNAC	3 cut(s)	158, 224, 513
Hpy188I	TCNGA	4 cut(s)	205, 320, 594, 607
Hpy188III	TCNNGA	3 cut(s)	130, 581, 620
Hpy8I	GTNNAC	3 cut(s)	158, 224, 513
HpyAV	CCTTC	3 cut(s)	68, 523, 599
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 362
HpyF3I	CTNAG	2 cut(s)	202, 604
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	5 cut(s)	53, 92, 176, 268, 566
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	2 cut(s)	66, 132
LpnPI	CCDG	7 cut(s)	115, 315, 342, 347, 389, 409, 439
MaeI	CTAG	2 cut(s)	581, 652
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	5 cut(s)	357, 421, 440, 464, 613
MboII	GAAGA	3 cut(s)	359, 607, 644
MfeI	CAATTG	1 cut(s)	113
MhlI	GDGCHC	2 cut(s)	49, 71
MluCI	AATT	5 cut(s)	21, 113, 196, 295, 435
MlyI	GAGTC	2 cut(s)	153, 231
MmeI	TCCRAC	3 cut(s)	44, 395, 518
MnlI	CCTC	2 cut(s)	211, 613
MroXI	GAANNNNTTC	1 cut(s)	588
MseI	TTAA	3 cut(s)	24, 180, 306
MslI	CAYNNNNRTG	1 cut(s)	245
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	330
MunI	CAATTG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	75, 362
NdeI	CATATG	1 cut(s)	73
NlaIII	CATG	5 cut(s)	53, 92, 176, 268, 566
NmuCI	GTSAC	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	588
PfeI	GAWTC	1 cut(s)	584
PinAI	ACCGGT	1 cut(s)	425
PleI	GAGTC	2 cut(s)	153, 231
PpsI	GAGTC	2 cut(s)	153, 231
PshAI	GACNNNNGTC	1 cut(s)	355
PsiI	TTATAA	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	245
SalI	GTCGAC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	24, 180, 306
SchI	GAGTC	2 cut(s)	153, 231
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	2 cut(s)	49, 71
SetI	ASST	6 cut(s)	103, 137, 186, 314, 447, 627
SfcI	CTRYAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	5 cut(s)	21, 113, 196, 295, 435
SseBI	AGGCCT	1 cut(s)	407
SsiI	CCGC	1 cut(s)	78
SspMI	CTAG	2 cut(s)	581, 652
StuI	AGGCCT	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	157, 162
TasI	AATT	5 cut(s)	21, 113, 196, 295, 435
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	3 cut(s)	24, 180, 306
Tru9I	TTAA	3 cut(s)	24, 180, 306
TscAI	CASTG	2 cut(s)	366, 531
TseFI	GTSAC	1 cut(s)	357
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	5 cut(s)	105, 129, 250, 398, 645
TspRI	CASTG	2 cut(s)	366, 531
Vha464I	CTTAAG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	588
XspI	CTAG	2 cut(s)	581, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.