MD15G1077500.v1.1
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0028386
Physical Location & Seq
Forward (+)
5297028 .. 5298467
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1077500.v1.1.491

Sequence Viewer

Length: 618 bp
ATGGAAACTGGACTTCCCATGTTTAATTGTCTCTTGCAGCACACGCTGAGGAACCTCTGTTCTTGTTCAGATTCTTCTTCCAATCCTTCCAAATGGGTTTATGCTGTCTTCTGGAGAATCTTGCCTCGGAACTATCCTCCCCCAAAGTGGGATTATGGAGGGAGTGCTCTTAATCGATCCAAAGGAAACAAACGGAACTGGATTCTTGTTTGGGAAGATGGGTTCTGTGATTTCTATGAATGTGAGCAAGCAGGAAGTGGGTACATCAAGGGGAGGTTTGGAGCTGATGTCTTCTTCAAAATGTCACATGAAGTCTATAATTTTGGAGAAGGATTAGTGGGGAAAGTAGCAGCAGAAAATAGCCACAAATGGGTGTTCAGAGATGCACCAAATGAAGGTGATCCTACCTTCATTTCCTCTTGGAATGCATCCACTGAACCTCAACCAAGGGCGTGGGAATTTCAATTCCAATCAGGCATACAGACTATTGCAATCATTTCTGTTAGAGAAGGCATAATTCAACTTGGCTCCTTCGACAAGGTTTGTGTTCGTCTCCCTTTGTTTTCCCTTCCAATCTCATCAACATCAACTGTAGCGATTCCTGGGCTCAATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

206

Amino Acids

23.12

Weight (kDa)

6.82

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 12 - 79 6.8e-08 bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH-MYC_N PF14215 98 - 181 3.6e-15 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028386)

Species Orthologous Gene IDs
malus_domestica MD15G1077500.v1.1
pyrus_communis pycom08g07630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 171, 395
AcsI RAATTY 1 cut(s) 458
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 4 cut(s) 147, 148, 370, 395
AgsI TTSAA 3 cut(s) 298, 464, 521
AjnI CCWGG 1 cut(s) 601
AloI GAACNNNNNNTCC 4 cut(s) 43, 75, 206, 238
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 2 cut(s) 35, 557
AlwI GGATC 2 cut(s) 171, 395
ApeKI GCWGC 2 cut(s) 37, 350
ApoI RAATTY 1 cut(s) 458
AsuHPI GGTGA 1 cut(s) 410
BanII GRGCYC 1 cut(s) 609
BbsI GAAGAC 2 cut(s) 100, 283
Bbv12I GWGCWC 1 cut(s) 169
BbvCI CCTCAGC 1 cut(s) 47
BbvI GCAGC 2 cut(s) 49, 362
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 603
BcoDI GTCTC 2 cut(s) 35, 557
BfmI CTRYAG 1 cut(s) 591
BisI GCNGC 2 cut(s) 38, 351
BlsI GCNGC 2 cut(s) 39, 352
Bme1390I CCNGG 1 cut(s) 603
BmiI GGNNCC 2 cut(s) 53, 529
BmrFI CCNGG 1 cut(s) 603
BmsI GCATC 2 cut(s) 373, 437
BpiI GAAGAC 2 cut(s) 100, 283
BpmI CTGGAG 1 cut(s) 133
Bpu10I CCTNAGC 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 175
BsaJI CCNNGG 3 cut(s) 125, 446, 602
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 148, 370, 395
Bse1I ACTGG 2 cut(s) 13, 203
BseBI CCWGG 1 cut(s) 603
BseCI ATCGAT 1 cut(s) 175
BseDI CCNNGG 3 cut(s) 125, 446, 602
BseGI GGATG 1 cut(s) 428
BseLI CCNNNNNNNGG 4 cut(s) 147, 148, 370, 395
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 2 cut(s) 13, 203
BseXI GCAGC 2 cut(s) 49, 362
BshVI ATCGAT 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 169
BslI CCNNNNNNNGG 4 cut(s) 147, 148, 370, 395
BsmAI GTCTC 2 cut(s) 35, 557
BsmBI CGTCTC 1 cut(s) 557
BsmI GAATGC 1 cut(s) 430
Bsp1286I GDGCHC 2 cut(s) 169, 609
Bsp143I GATC 2 cut(s) 176, 400
BspCNI CTCAG 1 cut(s) 39
BspDI ATCGAT 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 53, 529
BspPI GGATC 2 cut(s) 171, 395
BsrI ACTGG 2 cut(s) 13, 203
BssECI CCNNGG 3 cut(s) 125, 446, 602
BssMI GATC 2 cut(s) 176, 400
BssT1I CCWWGG 1 cut(s) 446
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 428
BstKTI GATC 2 cut(s) 179, 403
BstMAI GTCTC 2 cut(s) 35, 557
BstMBI GATC 2 cut(s) 176, 400
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 603
BstSCI CCNGG 1 cut(s) 601
BstSFI CTRYAG 1 cut(s) 591
BstV1I GCAGC 2 cut(s) 49, 362
BstV2I GAAGAC 2 cut(s) 100, 283
BstXI CCANNNNNNTGG 1 cut(s) 453
Bsu15I ATCGAT 1 cut(s) 175
BsuTUI ATCGAT 1 cut(s) 175
BtsCI GGATG 1 cut(s) 428
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 249
ClaI ATCGAT 1 cut(s) 175
Csp6I GTAC 1 cut(s) 262
CviAII CATG 2 cut(s) 19, 308
CviJI RGCY 4 cut(s) 284, 363, 528, 607
CviKI_1 RGCY 4 cut(s) 284, 363, 528, 607
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 178, 402
DpnII GATC 2 cut(s) 176, 400
Eco130I CCWWGG 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 609
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 446
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 446
Esp3I CGTCTC 1 cut(s) 557
FaeI CATG 2 cut(s) 22, 311
FaiI YATR 8 cut(s) 20, 102, 156, 237, 309, 318, 479, 515
FatI CATG 2 cut(s) 18, 307
Fnu4HI GCNGC 2 cut(s) 38, 351
FokI GGATG 1 cut(s) 415
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 2 cut(s) 38, 351
GluI GCNGC 2 cut(s) 38, 351
GsuI CTGGAG 1 cut(s) 133
Hin1II CATG 2 cut(s) 22, 311
HinfI GANTC 4 cut(s) 71, 117, 202, 598
HphI GGTGA 1 cut(s) 410
Hpy188I TCNGA 3 cut(s) 70, 129, 380
Hpy188III TCNNGA 1 cut(s) 112
HpyAV CCTTC 7 cut(s) 96, 323, 389, 418, 503, 541, 578
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4V TGCA 4 cut(s) 37, 386, 428, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 2 cut(s) 22, 311
Kzo9I GATC 2 cut(s) 176, 400
LmnI GCTCC 2 cut(s) 281, 533
LpnPI CCDG 5 cut(s) 97, 184, 237, 459, 588
Lsp1109I GCAGC 2 cut(s) 49, 362
LweI GCATC 2 cut(s) 373, 437
MaeIII GTNAC 1 cut(s) 303
MalI GATC 2 cut(s) 178, 402
MboI GATC 2 cut(s) 176, 400
MboII GAAGA 6 cut(s) 66, 69, 100, 227, 283, 286
MhlI GDGCHC 2 cut(s) 169, 609
MluCI AATT 6 cut(s) 25, 319, 458, 464, 516, 610
MnlI CCTC 8 cut(s) 42, 65, 135, 147, 152, 267, 427, 450
Mph1103I ATGCAT 1 cut(s) 430
MseI TTAA 2 cut(s) 24, 171
MspR9I CCNGG 1 cut(s) 603
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 1 cut(s) 603
MwoI GCNNNNNNNGC 1 cut(s) 43
NdeII GATC 2 cut(s) 176, 400
NlaIII CATG 2 cut(s) 22, 311
NlaIV GGNNCC 2 cut(s) 53, 529
NmuCI GTSAC 1 cut(s) 303
NsiI ATGCAT 1 cut(s) 430
PctI GAATGC 1 cut(s) 430
PfeI GAWTC 4 cut(s) 71, 117, 202, 598
PkrI GCNGC 2 cut(s) 39, 352
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 2 cut(s) 53, 529
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SaqAI TTAA 2 cut(s) 24, 171
SatI GCNGC 2 cut(s) 38, 351
Sau3AI GATC 2 cut(s) 176, 400
ScrFI CCNGG 1 cut(s) 603
SduI GDGCHC 2 cut(s) 169, 609
SetI ASST 7 cut(s) 57, 278, 286, 400, 410, 442, 543
SfaNI GCATC 2 cut(s) 373, 437
SfcI CTRYAG 1 cut(s) 591
Sse9I AATT 6 cut(s) 25, 319, 458, 464, 516, 610
StyD4I CCNGG 1 cut(s) 601
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 1 cut(s) 592
TaqI TCGA 2 cut(s) 175, 534
TasI AATT 6 cut(s) 25, 319, 458, 464, 516, 610
TfiI GAWTC 4 cut(s) 71, 117, 202, 598
Tru1I TTAA 2 cut(s) 24, 171
Tru9I TTAA 2 cut(s) 24, 171
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 303
TseI GCWGC 2 cut(s) 37, 350
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 4 cut(s) 252, 324, 400, 408
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 1 cut(s) 439
XapI RAATTY 1 cut(s) 458
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.