Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0028382

Physical Location & Seq

Genomic Coordinates Forward (+)

6184766 .. 6186528

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1088700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGATTAGATGTCCAATGAAATATATTTGCATGCCTGTGACAACTTTTGGTCCATTTGAGGAAAGAATTATTACCATATTTTTCCATGGGAATGAGAGCAAGACCTTTTGCCCCCAAGAGTTTGCAATATTGATGAATGAACCATGCCAACGTCACTTAATTGCTGTTAGGAAGATCATGTATTCAATCAAAGATGCCGGTTGCCATGATTTATTTGTGTTGAAGGTGCCGATTTCGAATTGGTTGGCTTTAAAAATGCAGATTTGGCTATTGCATTTTCCATGGGGTCAGCATTGCCTAGACAACCACTATTCACTGTCATCCACCGAAGAAAGGTATCAGGCATTTAATTTCGCGATTGCAGGATGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

125

Amino Acids

14.53

Weight (kDa)

7.63

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028382)

Species	Orthologous Gene IDs
malus_domestica	MD15G1088700.v1.1
prunus_persica	Prupe.1G442800_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AccII	CGCG	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	2 cut(s)	186, 223
AspS9I	GGNCC	1 cut(s)	50
AsuII	TTCGAA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	1 cut(s)	184
Bpu14I	TTCGAA	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	85, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse118I	RCCGGY	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	292
BseDI	CCNNGG	2 cut(s)	85, 281
BseGI	GGATG	2 cut(s)	320, 371
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMI	GCAATG	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	356
BshNI	GGYRCC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	333
Bsp119I	TTCGAA	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	174
Bsp19I	CCATGG	2 cut(s)	85, 281
Bsp68I	TCGCGA	1 cut(s)	356
BspFNI	CGCG	1 cut(s)	356
BspLI	GGNNCC	1 cut(s)	228
BspT104I	TTCGAA	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	85, 281
BssMI	GATC	1 cut(s)	174
BssT1I	CCWWGG	2 cut(s)	85, 281
Bst4CI	ACNGT	1 cut(s)	318
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	32
BstDSI	CCRYGG	2 cut(s)	85, 281
BstF5I	GGATG	2 cut(s)	320, 371
BstFNI	CGCG	1 cut(s)	356
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	265
BstNSI	RCATGY	1 cut(s)	34
BstUI	CGCG	1 cut(s)	356
BtgI	CCRYGG	2 cut(s)	85, 281
BtsCI	GGATG	2 cut(s)	320, 371
BtsIMutI	CAGTG	1 cut(s)	314
BtuMI	TCGCGA	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	50
CviAII	CATG	6 cut(s)	31, 86, 144, 178, 206, 282
CviJI	RGCY	2 cut(s)	248, 268
CviKI_1	RGCY	2 cut(s)	248, 268
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DraI	TTTAAA	1 cut(s)	252
Eco130I	CCWWGG	2 cut(s)	85, 281
Eco47I	GGWCC	1 cut(s)	50
EcoT14I	CCWWGG	2 cut(s)	85, 281
ErhI	CCWWGG	2 cut(s)	85, 281
FaeI	CATG	6 cut(s)	34, 89, 147, 181, 209, 285
FaiI	YATR	9 cut(s)	24, 32, 77, 87, 145, 179, 207, 283, 373
FatI	CATG	6 cut(s)	30, 85, 143, 177, 205, 281
FokI	GGATG	1 cut(s)	307
FspBI	CTAG	1 cut(s)	299
HapII	CCGG	1 cut(s)	198
Hin1II	CATG	6 cut(s)	34, 89, 147, 181, 209, 285
HpaII	CCGG	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	355
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	5 cut(s)	30, 125, 259, 274, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	265
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	6 cut(s)	34, 89, 147, 181, 209, 285
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	4 cut(s)	48, 211, 326, 348
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	2 cut(s)	37, 152
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	2 cut(s)	184, 341
MluCI	AATT	4 cut(s)	66, 159, 238, 349
MnlI	CCTC	1 cut(s)	52
MseI	TTAA	3 cut(s)	158, 251, 348
MslI	CAYNNNNRTG	2 cut(s)	35, 90
MspI	CCGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	265
NcoI	CCATGG	2 cut(s)	85, 281
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	6 cut(s)	34, 89, 147, 181, 209, 285
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	2 cut(s)	37, 152
NruI	TCGCGA	1 cut(s)	356
NspI	RCATGY	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	50
RruI	TCGCGA	1 cut(s)	356
RseI	CAYNNNNRTG	2 cut(s)	35, 90
SaqAI	TTAA	3 cut(s)	158, 251, 348
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	50
SetI	ASST	4 cut(s)	107, 154, 228, 338
SfaNI	GCATC	1 cut(s)	184
SfuI	TTCGAA	1 cut(s)	236
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	35, 90
SphI	GCATGC	1 cut(s)	34
Sse9I	AATT	4 cut(s)	66, 159, 238, 349
SspI	AATATT	1 cut(s)	129
SspMI	CTAG	1 cut(s)	299
StyI	CCWWGG	2 cut(s)	85, 281
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	236
TasI	AATT	4 cut(s)	66, 159, 238, 349
Tru1I	TTAA	3 cut(s)	158, 251, 348
Tru9I	TTAA	3 cut(s)	158, 251, 348
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	2 cut(s)	37, 152
Tsp45I	GTSAC	2 cut(s)	37, 152
TspDTI	ATGAA	3 cut(s)	32, 149, 153
TspRI	CASTG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	50
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.