Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0028399

Physical Location & Seq

Genomic Coordinates Reverse (-)

25512881 .. 25521444

Gene Structure 8564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1282500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTACCAGCAACAGAAAGGGACGACGACGTCTGGAAACGGACAATTTGAGAATTGGGGTGATAATTCAGCCATGGCCGACAACAGCCAGCGGACTGACACTTATACGGATGTTGACATCGATGACAAAAACCATCATGGCGCACTAATGGTAGTGGATTCCACAGAGCAGGCAAAGGAAAGAACTACTGGTGACCAAAAGACACTACGTAGGCTGGCCCAGAACGGAGAAGCAGCAAGGAAGAGTCGCCTAAGGAAGAAAGTGTGTTTGAAAATTTTCAACTCTGCAAGTTGTGAAAAAAAAGGGGTTTCGAAATATTGTGCTTTCAAGTTTCTGCATCTTTTCGTTTCTGTTTCAATGATTTCTGCACTAAAGGTGAGTGACCTAAAATTAGGGAATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

135

Amino Acids

14.94

Weight (kDa)

9.23

Isoelectric Point (pI)

12.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028399)

Species	Orthologous Gene IDs
malus_domestica	MD15G1282500.v1.1
pyrus_communis	pycom12g06190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	28
AatII	GACGTC	1 cut(s)	32
AciI	CCGC	1 cut(s)	91
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	4 cut(s)	271, 280, 328, 357
AoxI	GGCC	2 cut(s)	75, 216
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	3 cut(s)	71, 203, 388
AsuII	TTCGAA	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	1 cut(s)	141
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	217
BmsI	GCATC	1 cut(s)	346
Bpu14I	TTCGAA	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	193
Bse21I	CCTNAGG	1 cut(s)	251
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	77, 218
BshVI	ATCGAT	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	77, 218
Bsp119I	TTCGAA	1 cut(s)	311
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	91
BspANI	GGCC	2 cut(s)	77, 218
BspDI	ATCGAT	1 cut(s)	120
BspT104I	TTCGAA	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	72
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	29
BstBAI	YACGTR	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	3 cut(s)	89, 171, 216
BstDEI	CTNAG	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	72
BstEII	GGTNACC	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	143
BstPI	GGTNACC	1 cut(s)	191
BstSNI	TACGTA	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	120
Bsu36I	CCTNAGG	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	77, 218
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	3 cut(s)	89, 171, 216
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	73, 137
CviJI	RGCY	5 cut(s)	71, 77, 87, 214, 218
CviKI_1	RGCY	5 cut(s)	71, 77, 87, 214, 218
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	251
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Eco105I	TACGTA	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	72
Eco81I	CCTNAGG	1 cut(s)	251
Eco91I	GGTNACC	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	76, 140
FaiI	YATR	3 cut(s)	74, 105, 138
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	72, 136
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	234
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	77, 218
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	76, 140
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	2 cut(s)	158, 244
HphI	GGTGA	3 cut(s)	71, 203, 388
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188III	TCNNGA	1 cut(s)	33
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	2 cut(s)	28, 31
HpyCH4IV	ACGT	2 cut(s)	29, 208
HpyCH4V	TGCA	3 cut(s)	287, 337, 368
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	2 cut(s)	29, 208
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	76, 140
HspAI	GCGC	1 cut(s)	141
LpnPI	CCDG	7 cut(s)	18, 20, 101, 155, 174, 200, 233
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	1 cut(s)	346
MaeII	ACGT	2 cut(s)	29, 208
MaeIII	GTNAC	2 cut(s)	191, 380
MboII	GAAGA	2 cut(s)	253, 268
MluCI	AATT	6 cut(s)	44, 52, 64, 273, 389, 397
MlyI	GAGTC	1 cut(s)	253
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	1 cut(s)	403
MspA1I	CMGCKG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	72
NlaIII	CATG	2 cut(s)	76, 140
NmuCI	GTSAC	2 cut(s)	191, 380
NspV	TTCGAA	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	158
PflFI	GACNNNGTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	209
PspEI	GGTNACC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	217
PsyI	GACNNNGTC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	253
SetI	ASST	4 cut(s)	32, 211, 378, 387
SfaNI	GCATC	1 cut(s)	346
SfuI	TTCGAA	1 cut(s)	311
SnaBI	TACGTA	1 cut(s)	209
Sse9I	AATT	6 cut(s)	44, 52, 64, 273, 389, 397
SsiI	CCGC	1 cut(s)	91
SspI	AATATT	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	72
TaiI	ACGT	2 cut(s)	32, 211
TaqI	TCGA	2 cut(s)	120, 311
TasI	AATT	6 cut(s)	44, 52, 64, 273, 389, 397
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TseFI	GTSAC	2 cut(s)	191, 380
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	2 cut(s)	191, 380
TspGWI	ACGGA	3 cut(s)	54, 122, 240
Tth111I	GACNNNGTC	1 cut(s)	28
XapI	RAATTY	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	275
ZraI	GACGTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.