Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0028369

Physical Location & Seq

Genomic Coordinates Reverse (-)

30117315 .. 30119430

Gene Structure 2116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1305800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTTTCATGCAGCTGGTTCTGATTCTGAATCTCCAGAATCTGTGGGACAAGGGAAGTTCCCTTTGAATTCAATCAATGTAATGCTATCATCCAGGCCTTCTGGGACTCAGCCAACCATAACAAAAGAGAATTCTCTAGCCACCACGTCAAAGAATAATGACGAAGTGAATGGAAAACCTGGTCCCGGTGGACTTTTTTTCAAGTTCAGCATAGATGGGGCTCCCTACCTGAGAACATATTCTACATTTCAAGATCTGTCTTCTGCTCTGGAAAAAGATGTTCAGCTCTTTTATCATAGGGCAATAAGGGTCCCGTGGAGCTCCAGGGAGGGAAAGACCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

115

Amino Acids

12.44

Weight (kDa)

6.73

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028369)

Species	Orthologous Gene IDs
malus_domestica	MD15G1305800.v1.1
pyrus_communis	pycom15g27030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	67, 130
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	67, 72, 202, 251
AjiI	CACGTC	1 cut(s)	147
AjnI	CCWGG	3 cut(s)	92, 178, 323
AluBI	AGCT	3 cut(s)	14, 286, 321
AluI	AGCT	3 cut(s)	14, 286, 321
Alw21I	GWGCWC	1 cut(s)	323
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	2 cut(s)	67, 130
Asp700I	GAANNNNTTC	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	182, 310
AsuC2I	CCSGG	1 cut(s)	186
AvaII	GGWCC	2 cut(s)	182, 310
BanII	GRGCYC	2 cut(s)	223, 323
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	3 cut(s)	94, 180, 325
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	1 cut(s)	137
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	4 cut(s)	94, 180, 186, 325
Bme18I	GGWCC	2 cut(s)	182, 310
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	182, 310
BmiI	GGNNCC	4 cut(s)	184, 222, 311, 312
BmrFI	CCNGG	4 cut(s)	94, 180, 186, 325
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	2 cut(s)	18, 307
BpuMI	CCSGG	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	314, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
BseBI	CCWGG	3 cut(s)	94, 180, 325
BseDI	CCNNGG	2 cut(s)	314, 324
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	2 cut(s)	122, 221
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	4 cut(s)	60, 118, 168, 296
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmFI	GGGAC	4 cut(s)	60, 118, 168, 296
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	223, 323
Bsp143I	GATC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	121, 222
BspLI	GGNNCC	4 cut(s)	184, 222, 311, 312
BssECI	CCNNGG	2 cut(s)	314, 324
BssMI	GATC	1 cut(s)	253
Bst2UI	CCWGG	3 cut(s)	94, 180, 325
BstDEI	CTNAG	2 cut(s)	108, 230
BstDSI	CCRYGG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstNI	CCWGG	3 cut(s)	94, 180, 325
BstSCI	CCNGG	4 cut(s)	92, 178, 184, 323
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	314
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	182, 310
CsiI	ACCWGGT	1 cut(s)	178
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	7 cut(s)	14, 97, 112, 140, 221, 286, 321
CviKI_1	RGCY	7 cut(s)	14, 97, 112, 140, 221, 286, 321
DdeI	CTNAG	2 cut(s)	108, 230
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Ecl136II	GAGCTC	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	97
Eco24I	GRGCYC	2 cut(s)	223, 323
Eco47I	GGWCC	2 cut(s)	182, 310
Eco53kI	GAGCTC	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRI	GAATTC	2 cut(s)	67, 130
EcoRII	CCWGG	3 cut(s)	92, 178, 323
EcoT38I	GRGCYC	2 cut(s)	223, 323
FaeI	CATG	1 cut(s)	11
FaiI	YATR	5 cut(s)	9, 119, 212, 238, 297
FaqI	GGGAC	4 cut(s)	60, 118, 168, 296
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	76
FriOI	GRGCYC	2 cut(s)	223, 323
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	2 cut(s)	18, 307
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	186
Hin1II	CATG	1 cut(s)	11
HinfI	GANTC	4 cut(s)	23, 29, 38, 106
HpaII	CCGG	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	2 cut(s)	22, 28
Hpy188III	TCNNGA	3 cut(s)	35, 251, 269
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	108, 230
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	11
KflI	GGGWCCC	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	3 cut(s)	226, 318, 326
Lsp1109I	GCAGC	1 cut(s)	23
MabI	ACCWGGT	1 cut(s)	178
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	146
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	1 cut(s)	252
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	2 cut(s)	223, 323
MluCI	AATT	2 cut(s)	67, 130
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	238
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	4 cut(s)	94, 180, 186, 325
MvaI	CCWGG	3 cut(s)	94, 180, 325
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	4 cut(s)	184, 222, 311, 312
PceI	AGGCCT	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	3 cut(s)	23, 29, 38
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	310
Psp124BI	GAGCTC	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	3 cut(s)	92, 178, 323
PspGI	CCWGG	3 cut(s)	92, 178, 323
PspN4I	GGNNCC	4 cut(s)	184, 222, 311, 312
PspPI	GGNCC	2 cut(s)	182, 310
PspPPI	RGGWCCY	1 cut(s)	310
PsrI	GAACNNNNNNTAC	2 cut(s)	226, 258
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	323
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	2 cut(s)	182, 310
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	4 cut(s)	94, 180, 186, 325
SduI	GDGCHC	2 cut(s)	223, 323
SetI	ASST	6 cut(s)	16, 149, 181, 231, 288, 323
SexAI	ACCWGGT	1 cut(s)	178
SinI	GGWCC	2 cut(s)	182, 310
Sse9I	AATT	2 cut(s)	67, 130
SseBI	AGGCCT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	97
StyD4I	CCNGG	4 cut(s)	92, 178, 184, 323
TaiI	ACGT	1 cut(s)	149
TasI	AATT	2 cut(s)	67, 130
TfiI	GAWTC	3 cut(s)	23, 29, 38
TseI	GCWGC	1 cut(s)	11
VpaK11BI	GGWCC	2 cut(s)	182, 310
XapI	RAATTY	2 cut(s)	67, 130
XmnI	GAANNNNTTC	1 cut(s)	238
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.