MD15G1321100.v1.1

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0022336
Physical Location & Seq
Forward (+)
33502020 .. 33502555
536 bp
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UTR
Exon/CDS
Intron
MD15G1321100.v1.1.491

Sequence Viewer

Length: 369 bp
ATGTTTCTTTTGCAAGATCTCAAGTTCTATTCATGTTACAAGAGCATACTTATTACGTTTGTTTTTTCCTTTTGTCAGGAGTTCAGAGGTTATGTATTTAAAATTATGGGAGGATGTGATAAGCATGGCTTTCCTTTGAAGCAAGGAGTGTTAACCACAGGCCGTGTTCGCCCTTTGCTCCATAGAGGAACCCCATGCTTCCGTGGGCATGGAAGGAGGAATGGGGAACGAATAAGGAAATCTGTTCGTGGATGCATCGTCAGTCCAGACCTCTCTGTTCTGAACTTGTTATTTGTTGGAACACCCATTGTCCCACATCAGCCAAGAGGGAAGAGAGAAAACATTTTAAATAGAATTATCTCACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

123

Amino Acids

13.97

Weight (kDa)

10.53

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 26 - 99 2.4e-25 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022336)

Species Orthologous Gene IDs
malus_domestica MD15G1321100.v1.1
rosa_chinensis RchiOBHm_Chr6g0254121 RchiOBHm_Chr6g0281501 RchiOBHm_Chr7g0187181

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 139
AoxI GGCC 1 cut(s) 160
BceAI ACGGC 1 cut(s) 147
BglII AGATCT 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 2 cut(s) 242, 264
BpuEI CTTGAG 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 2 cut(s) 119, 257
BshFI GGCC 1 cut(s) 162
BslFI GGGAC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 16
BspANI GGCC 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 326
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 2 cut(s) 119, 257
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 119, 257
CviAII CATG 4 cut(s) 33, 125, 195, 209
CviJI RGCY 3 cut(s) 129, 162, 322
CviKI_1 RGCY 3 cut(s) 129, 162, 322
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
DraI TTTAAA 2 cut(s) 100, 348
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
EcoT22I ATGCAT 1 cut(s) 257
FaeI CATG 4 cut(s) 36, 128, 198, 212
FaiI YATR 8 cut(s) 34, 47, 93, 107, 126, 183, 196, 210
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 296
FatI CATG 4 cut(s) 32, 124, 194, 208
FokI GGATG 2 cut(s) 126, 264
HaeIII GGCC 1 cut(s) 162
Hin1II CATG 4 cut(s) 36, 128, 198, 212
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HpaI GTTAAC 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 2 cut(s) 86, 282
Hpy188III TCNNGA 2 cut(s) 77, 266
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 2 cut(s) 13, 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 4 cut(s) 36, 128, 198, 212
KspAI GTTAAC 1 cut(s) 153
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 3 cut(s) 62, 144, 279
LweI GCATC 2 cut(s) 242, 264
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 35
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 343
MflI RGATCY 1 cut(s) 16
MluCI AATT 2 cut(s) 102, 354
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 6 cut(s) 80, 104, 179, 210, 281, 320
Mph1103I ATGCAT 1 cut(s) 257
MseI TTAA 3 cut(s) 99, 152, 347
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeII GATC 1 cut(s) 16
NlaIII CATG 4 cut(s) 36, 128, 198, 212
NlaIV GGNNCC 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 16
SaqAI TTAA 3 cut(s) 99, 152, 347
Sau3AI GATC 1 cut(s) 16
SetI ASST 3 cut(s) 59, 91, 273
SfaNI GCATC 2 cut(s) 242, 264
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 2 cut(s) 102, 354
TaiI ACGT 1 cut(s) 59
TasI AATT 2 cut(s) 102, 354
Tru1I TTAA 3 cut(s) 99, 152, 347
Tru9I TTAA 3 cut(s) 99, 152, 347
TspDTI ATGAA 1 cut(s) 21
TspGWI ACGGA 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.