Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0028392

Physical Location & Seq

Genomic Coordinates Reverse (-)

43517400 .. 43520343

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1361600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGAGAGAAGTGAAGGTTAAAGGAGTGTCTGGGTTTTGTTCTCTGGATTCTGGTGGAGAATCTCACATCTTACAATCTGAGTCAGCTAGTGAAAGCCATAGACATTCATCCTTAAATGTGCAGTTCACTCCTGAAATAGAAAAGAAATTAGTAGCTGGAATGAAAGACGCTGTAATCGTTGATCGATTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Rad60-SLD_2

Protein Analysis

65

Amino Acids

7.04

Weight (kDa)

6.25

Isoelectric Point (pI)

57.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028392)

Species	Orthologous Gene IDs
malus_domestica	MD15G1361600.v1.1
pyrus_communis	pycom15g32320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	2 cut(s)	86, 155
AluI	AGCT	2 cut(s)	86, 155
BfaI	CTAG	1 cut(s)	87
Bsa29I	ATCGAT	1 cut(s)	184
BseCI	ATCGAT	1 cut(s)	184
BseGI	GGATG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	181
BspCNI	CTCAG	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	184
BssMI	GATC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	107
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	184
BsuTUI	ATCGAT	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	107
ClaI	ATCGAT	1 cut(s)	184
CseI	GACGC	1 cut(s)	176
CviJI	RGCY	3 cut(s)	86, 96, 155
CviKI_1	RGCY	3 cut(s)	86, 96, 155
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
FaiI	YATR	1 cut(s)	99
FokI	GGATG	1 cut(s)	94
FspBI	CTAG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	176
HinfI	GANTC	3 cut(s)	47, 59, 80
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	44, 131
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	181
LpnPI	CCDG	5 cut(s)	15, 29, 36, 141, 144
MaeI	CTAG	1 cut(s)	87
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	89
MseI	TTAA	2 cut(s)	18, 113
NdeII	GATC	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	47, 59
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	18, 113
Sau3AI	GATC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	89
SetI	ASST	3 cut(s)	18, 88, 157
SgeI	CNNG	6 cut(s)	42, 56, 63, 99, 143, 168
Sse9I	AATT	1 cut(s)	146
SspMI	CTAG	1 cut(s)	87
TaqI	TCGA	1 cut(s)	184
TasI	AATT	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	47, 59
Tru1I	TTAA	2 cut(s)	18, 113
Tru9I	TTAA	2 cut(s)	18, 113
TspDTI	ATGAA	2 cut(s)	96, 176
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.