MD15G1385200.v1.1

Mechanosensitive ion channel protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0028381
Physical Location & Seq
Reverse (-)
47588927 .. 47591755
2829 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1385200.v1.1.491

Sequence Viewer

Length: 729 bp
ATGCCTCATGCGGCTGCTACGCGGTTTTTGCATGATTGGAGAAGCCACAGTAATCGTGGATGCCGTAATCCTGATGCTTGTCTTGTAGGAAAGGGTCGAGTACATATGGTTGGCATCAATCTTCCGTCGCATGGTTTGGGTGCCTGCAGTCTCCATCTTTTAAGCAGTGTACGCGTCCCAATAGGTCCAGTTTCTTCCAGATGCAATGTTTTCTTGTGCAGATCTGTTTTAGGTCCAGGTGGACGAAATGGAGTTCCTGTTGTGAAATCTGCTACTCTTGTCTTAACAAGGTCCTATGATGCTTTACGTGGAAGCCCTGCTTTGCTTAAATTGATCCCAGCAGCGGCTATCATTGCTTTTGCTGTTTGGGGTATTGGGCCACTATTGCGTCTCGGCAGGGTTATTTTTCTTCGACGGAATGATAATACTTGGAAGAAAAGTAGGTCCCACTATGTCATGACTTCTTACCTTCGGCCCTTGCTTCTCTGGACTGGAGTGATACTTTTGTGCAGAGCATTGGATCCTGTAGTCCTACCTTCAGAAGCAAGCCAGGCTGTCAAGCAACGTCTTATAAATTTTACACAATCGTTATCAACAGTGCTGGCATTTGCCTATTGTTTGTCAAGCTTAATTCAACAAGCACAAAAGTTCTTTACGGAGACAAATGACACAAGAAATGTATGTTTTCTTACTTTCTCAGTAGGCAACTCCTGTATTTACTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MS_channel

Protein Analysis

243

Amino Acids

26.54

Weight (kDa)

10.44

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MSL2_3 PF25237 150 - 238 6.7e-37 Mechanosensitive channel protein 2/3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028381)

Species Orthologous Gene IDs
malus_domestica MD15G1385200.v1.1
pyrus_communis pycom08g17010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 572
AccB1I GGYRCC 1 cut(s) 140
AccII CGCG 2 cut(s) 22, 174
AciI CCGC 3 cut(s) 11, 22, 344
AclWI GGATC 3 cut(s) 328, 515, 528
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 2 cut(s) 102, 171
AfiI CCNNNNNNNGG 2 cut(s) 131, 343
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 1 cut(s) 635
AjnI CCWGG 2 cut(s) 235, 549
AluBI AGCT 1 cut(s) 627
AluI AGCT 1 cut(s) 627
Alw26I GTCTC 3 cut(s) 155, 395, 653
AlwI GGATC 3 cut(s) 328, 515, 528
AoxI GGCC 2 cut(s) 377, 473
ApeKI GCWGC 2 cut(s) 14, 341
ApoI RAATTY 1 cut(s) 574
AspS9I GGNCC 6 cut(s) 185, 233, 291, 377, 444, 474
AvaII GGWCC 4 cut(s) 185, 233, 291, 444
BaeI ACNNNNGTAYC 2 cut(s) 491, 524
BamHI GGATCC 1 cut(s) 520
BanI GGYRCC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 353
BccI CCATC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 2 cut(s) 237, 551
BcoDI GTCTC 3 cut(s) 155, 395, 653
BfmI CTRYAG 2 cut(s) 145, 525
BglII AGATCT 1 cut(s) 221
BisI GCNGC 4 cut(s) 12, 15, 342, 345
BlsI GCNGC 4 cut(s) 13, 16, 343, 346
Bme1390I CCNGG 2 cut(s) 237, 551
Bme18I GGWCC 4 cut(s) 185, 233, 291, 444
BmgT120I GGNCC 6 cut(s) 185, 233, 291, 377, 444, 474
BmiI GGNNCC 3 cut(s) 142, 446, 522
BmrFI CCNGG 2 cut(s) 237, 551
BmsI GCATC 5 cut(s) 50, 64, 123, 191, 289
BpmI CTGGAG 1 cut(s) 513
BsaAI YACGTR 1 cut(s) 308
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 343
Bse1I ACTGG 2 cut(s) 188, 496
Bse3DI GCAATG 2 cut(s) 211, 351
BseBI CCWGG 2 cut(s) 237, 551
BseGI GGATG 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 131, 343
BseMI GCAATG 2 cut(s) 211, 351
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 2 cut(s) 188, 496
BseXI GCAGC 1 cut(s) 353
BseYI CCCAGC 1 cut(s) 337
BsgI GTGCAG 2 cut(s) 238, 529
Bsh1236I CGCG 2 cut(s) 22, 174
BshFI GGCC 2 cut(s) 379, 475
BshNI GGYRCC 1 cut(s) 140
BslFI GGGAC 2 cut(s) 161, 430
BslI CCNNNNNNNGG 2 cut(s) 131, 343
BsmAI GTCTC 3 cut(s) 155, 395, 653
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 2 cut(s) 161, 430
BsnI GGCC 2 cut(s) 379, 475
Bsp143I GATC 3 cut(s) 221, 333, 520
BspACI CCGC 3 cut(s) 11, 22, 344
BspANI GGCC 2 cut(s) 379, 475
BspCNI CTCAG 1 cut(s) 710
BspFNI CGCG 2 cut(s) 22, 174
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 3 cut(s) 142, 446, 522
BspMAI CTGCAG 1 cut(s) 149
BspPI GGATC 3 cut(s) 328, 515, 528
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 2 cut(s) 211, 351
BsrI ACTGG 2 cut(s) 188, 496
BssMI GATC 3 cut(s) 221, 333, 520
Bst2UI CCWGG 2 cut(s) 237, 551
Bst4CI ACNGT 2 cut(s) 50, 598
BstBAI YACGTR 1 cut(s) 308
BstC8I GCNNGC 3 cut(s) 145, 547, 603
BstDEI CTNAG 1 cut(s) 697
BstF5I GGATG 1 cut(s) 65
BstFNI CGCG 2 cut(s) 22, 174
BstKTI GATC 3 cut(s) 224, 336, 523
BstMAI GTCTC 3 cut(s) 155, 395, 653
BstMBI GATC 3 cut(s) 221, 333, 520
BstMWI GCNNNNNNNGC 5 cut(s) 28, 171, 353, 385, 551
BstNI CCWGG 2 cut(s) 237, 551
BstSCI CCNGG 2 cut(s) 235, 549
BstSFI CTRYAG 2 cut(s) 145, 525
BstUI CGCG 2 cut(s) 22, 174
BstV1I GCAGC 1 cut(s) 353
BstX2I RGATCY 2 cut(s) 221, 520
BstYI RGATCY 2 cut(s) 221, 520
BsuRI GGCC 2 cut(s) 379, 475
BtsCI GGATG 1 cut(s) 65
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 2 cut(s) 172, 603
Cac8I GCNNGC 3 cut(s) 145, 547, 603
CciI TCATGA 1 cut(s) 456
Cfr13I GGNCC 6 cut(s) 185, 233, 291, 377, 444, 474
CseI GACGC 2 cut(s) 163, 377
Csp6I GTAC 2 cut(s) 101, 170
CviAII CATG 4 cut(s) 8, 32, 131, 457
CviJI RGCY 9 cut(s) 14, 45, 315, 347, 379, 475, 549, 554, 627
CviKI_1 RGCY 9 cut(s) 14, 45, 315, 347, 379, 475, 549, 554, 627
CviQI GTAC 2 cut(s) 101, 170
DdeI CTNAG 1 cut(s) 697
DpnI GATC 3 cut(s) 223, 335, 522
DpnII GATC 3 cut(s) 221, 333, 520
Eco47I GGWCC 4 cut(s) 185, 233, 291, 444
Eco57I CTGAAG 1 cut(s) 522
EcoO109I RGGNCCY 2 cut(s) 291, 444
EcoRII CCWGG 2 cut(s) 235, 549
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 4 cut(s) 11, 35, 134, 460
FalI AAGNNNNNCTT 2 cut(s) 304, 336
FaqI GGGAC 2 cut(s) 161, 430
FatI CATG 4 cut(s) 7, 31, 130, 456
FauNDI CATATG 1 cut(s) 105
Fnu4HI GCNGC 4 cut(s) 12, 15, 342, 345
FokI GGATG 1 cut(s) 72
Fsp4HI GCNGC 4 cut(s) 12, 15, 342, 345
GluI GCNGC 4 cut(s) 12, 15, 342, 345
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 2 cut(s) 379, 475
HgaI GACGC 2 cut(s) 163, 377
Hin1II CATG 4 cut(s) 11, 35, 134, 460
HindIII AAGCTT 1 cut(s) 625
Hpy166II GTNNAC 2 cut(s) 170, 242
Hpy188I TCNGA 1 cut(s) 541
Hpy188III TCNNGA 4 cut(s) 71, 198, 457, 487
Hpy8I GTNNAC 2 cut(s) 170, 242
Hpy99I CGWCG 2 cut(s) 130, 417
HpyAV CCTTC 2 cut(s) 479, 546
HpyCH4III ACNGT 2 cut(s) 50, 598
HpyCH4IV ACGT 2 cut(s) 307, 565
HpyCH4V TGCA 5 cut(s) 31, 147, 204, 219, 510
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 171, 353, 385, 551
HpyF3I CTNAG 1 cut(s) 697
HpySE526I ACGT 2 cut(s) 307, 565
Hsp92II CATG 4 cut(s) 11, 35, 134, 460
Kzo9I GATC 3 cut(s) 221, 333, 520
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 5 cut(s) 50, 64, 123, 191, 289
MaeII ACGT 2 cut(s) 307, 565
MalI GATC 3 cut(s) 223, 335, 522
MboI GATC 3 cut(s) 221, 333, 520
MboII GAAGA 4 cut(s) 113, 186, 401, 445
MflI RGATCY 2 cut(s) 221, 520
MluCI AATT 3 cut(s) 329, 574, 630
MluI ACGCGT 1 cut(s) 172
MnlI CCTC 1 cut(s) 15
MseI TTAA 5 cut(s) 161, 284, 327, 629, 727
MspA1I CMGCKG 1 cut(s) 344
MspR9I CCNGG 2 cut(s) 237, 551
MvaI CCWGG 2 cut(s) 237, 551
MvnI CGCG 2 cut(s) 22, 174
MwoI GCNNNNNNNGC 5 cut(s) 28, 171, 353, 385, 551
NdeI CATATG 1 cut(s) 105
NdeII GATC 3 cut(s) 221, 333, 520
NlaIII CATG 4 cut(s) 11, 35, 134, 460
NlaIV GGNNCC 3 cut(s) 142, 446, 522
NmeAIII GCCGAG 1 cut(s) 372
PagI TCATGA 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PkrI GCNGC 4 cut(s) 13, 16, 343, 346
Ppu21I YACGTR 1 cut(s) 308
PpuMI RGGWCCY 2 cut(s) 291, 444
PsiI TTATAA 1 cut(s) 572
Psp5II RGGWCCY 2 cut(s) 291, 444
Psp6I CCWGG 2 cut(s) 235, 549
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 2 cut(s) 235, 549
PspN4I GGNNCC 3 cut(s) 142, 446, 522
PspPI GGNCC 6 cut(s) 185, 233, 291, 377, 444, 474
PspPPI RGGWCCY 2 cut(s) 291, 444
PstI CTGCAG 1 cut(s) 149
PsuI RGATCY 2 cut(s) 221, 520
RsaI GTAC 2 cut(s) 102, 171
RsaNI GTAC 2 cut(s) 101, 170
SaqAI TTAA 5 cut(s) 161, 284, 327, 629, 727
SatI GCNGC 4 cut(s) 12, 15, 342, 345
Sau3AI GATC 3 cut(s) 221, 333, 520
Sau96I GGNCC 6 cut(s) 185, 233, 291, 377, 444, 474
ScrFI CCNGG 2 cut(s) 237, 551
SfaNI GCATC 5 cut(s) 50, 64, 123, 191, 289
SfcI CTRYAG 2 cut(s) 145, 525
SinI GGWCC 4 cut(s) 185, 233, 291, 444
Sse9I AATT 3 cut(s) 329, 574, 630
SsiI CCGC 3 cut(s) 11, 22, 344
StyD4I CCNGG 2 cut(s) 235, 549
TaaI ACNGT 2 cut(s) 50, 598
TaiI ACGT 2 cut(s) 310, 568
TaqI TCGA 2 cut(s) 97, 412
TasI AATT 3 cut(s) 329, 574, 630
TatI WGTACW 1 cut(s) 100
TauI GCSGC 2 cut(s) 14, 347
Tru1I TTAA 5 cut(s) 161, 284, 327, 629, 727
Tru9I TTAA 5 cut(s) 161, 284, 327, 629, 727
TscAI CASTG 2 cut(s) 172, 603
TseI GCWGC 2 cut(s) 14, 341
TspGWI ACGGA 3 cut(s) 114, 430, 671
TspRI CASTG 2 cut(s) 172, 603
VpaK11BI GGWCC 4 cut(s) 185, 233, 291, 444
XapI RAATTY 1 cut(s) 574
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.