MD16G1079600.v1.1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0028550
Physical Location & Seq
Forward (+)
5589018 .. 5589943
926 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1079600.v1.1.491

Sequence Viewer

Length: 246 bp
ATGGACCCATCTCCCGCATCCACATTCACCGGGACGCGGTCGGTTACGTCACCTACCGCTACGCCGACTCTGCTCAAGCCGCCATCGCCGCCTCCCTCGTCCCGTCATTCGGCATCACAATCGAATCCAAAAAATTGCAGGTGCTTTGGGCGACGGACCCGTGATGGGTCGTCGGCAAGTTCGAATCTTGTGAGGGCTGAGGTGCCGCTGAGGGGGCGGCGCAGAGGGAACAAGCTTGCTTCTTAA

Protein Analysis

82

Amino Acids

8.59

Weight (kDa)

11.93

Isoelectric Point (pI)

88.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028550)

Species Orthologous Gene IDs
malus_domestica MD16G1079600.v1.1
pyrus_communis pycom10g00030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 129
Acc36I ACCTGC 1 cut(s) 129
AccB1I GGYRCC 1 cut(s) 202
AccII CGCG 1 cut(s) 37
AciI CCGC 7 cut(s) 15, 37, 57, 80, 89, 206, 217
AfiI CCNNNNNNNGG 4 cut(s) 36, 109, 165, 212
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 4, 156
AsuC2I CCSGG 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 19, 42
AsuII TTCGAA 1 cut(s) 182
AvaII GGWCC 2 cut(s) 4, 156
BanI GGYRCC 1 cut(s) 202
BbvCI CCTCAGC 2 cut(s) 198, 209
BccI CCATC 3 cut(s) 16, 91, 158
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BcnI CCSGG 1 cut(s) 31
BfuAI ACCTGC 1 cut(s) 129
BisI GCNGC 4 cut(s) 80, 89, 206, 218
BlsI GCNGC 4 cut(s) 81, 90, 207, 219
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 2 cut(s) 4, 156
BmgT120I GGNCC 2 cut(s) 4, 156
BmiI GGNNCC 3 cut(s) 6, 158, 204
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 2 cut(s) 26, 122
Bpu10I CCTNAGC 2 cut(s) 198, 209
Bpu14I TTCGAA 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 109, 165, 212
BseGI GGATG 1 cut(s) 17
BseLI CCNNNNNNNGG 4 cut(s) 36, 109, 165, 212
BseMII CTCAG 2 cut(s) 189, 200
Bsh1236I CGCG 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 202
BsiEI CGRYCG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 2 cut(s) 46, 85
BslI CCNNNNNNNGG 4 cut(s) 36, 109, 165, 212
BsmFI GGGAC 2 cut(s) 46, 85
Bsp119I TTCGAA 1 cut(s) 182
BspACI CCGC 7 cut(s) 15, 37, 57, 80, 89, 206, 217
BspCNI CTCAG 2 cut(s) 190, 201
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 3 cut(s) 6, 158, 204
BspMI ACCTGC 1 cut(s) 129
BspT104I TTCGAA 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 198, 209
BstF5I GGATG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 37
BstHHI GCGC 1 cut(s) 222
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 5 cut(s) 70, 79, 85, 88, 214
BstSCI CCNGG 1 cut(s) 29
BstUI CGCG 1 cut(s) 37
BtgZI GCGATG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 17
BveI ACCTGC 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 237
CfoI GCGC 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 4, 156
CseI GACGC 1 cut(s) 43
CviJI RGCY 3 cut(s) 79, 197, 235
CviKI_1 RGCY 3 cut(s) 79, 197, 235
DdeI CTNAG 2 cut(s) 198, 209
Eco47I GGWCC 2 cut(s) 4, 156
FaqI GGGAC 2 cut(s) 46, 85
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 4 cut(s) 80, 89, 206, 218
FokI GGATG 1 cut(s) 4
Fsp4HI GCNGC 4 cut(s) 80, 89, 206, 218
GlaI GCGC 1 cut(s) 221
GluI GCNGC 4 cut(s) 80, 89, 206, 218
HapII CCGG 1 cut(s) 30
HgaI GACGC 1 cut(s) 43
HhaI GCGC 1 cut(s) 222
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 3 cut(s) 67, 124, 184
HpaII CCGG 1 cut(s) 30
HphI GGTGA 2 cut(s) 19, 42
Hpy99I CGWCG 2 cut(s) 156, 175
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 5 cut(s) 70, 79, 85, 88, 214
HpyF3I CTNAG 2 cut(s) 198, 209
HpySE526I ACGT 1 cut(s) 47
HspAI GCGC 1 cut(s) 220
LpnPI CCDG 2 cut(s) 43, 124
LweI GCATC 2 cut(s) 26, 122
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 43, 48
MluCI AATT 1 cut(s) 133
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 6 cut(s) 102, 106, 186, 193, 204, 218
MseI TTAA 1 cut(s) 244
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 5 cut(s) 70, 79, 85, 88, 214
NciI CCSGG 1 cut(s) 31
NlaIV GGNNCC 3 cut(s) 6, 158, 204
NmuCI GTSAC 1 cut(s) 48
NspV TTCGAA 1 cut(s) 182
PaqCI CACCTGC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PfeI GAWTC 2 cut(s) 124, 184
PflFI GACNNNGTC 1 cut(s) 37
PkrI GCNGC 4 cut(s) 81, 90, 207, 219
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PspN4I GGNNCC 3 cut(s) 6, 158, 204
PspPI GGNCC 2 cut(s) 4, 156
PsyI GACNNNGTC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 244
SatI GCNGC 4 cut(s) 80, 89, 206, 218
Sau96I GGNCC 2 cut(s) 4, 156
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 31
SetI ASST 5 cut(s) 50, 55, 143, 204, 237
SfaNI GCATC 2 cut(s) 26, 122
SfuI TTCGAA 1 cut(s) 182
SinI GGWCC 2 cut(s) 4, 156
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 1 cut(s) 133
SsiI CCGC 7 cut(s) 15, 37, 57, 80, 89, 206, 217
StyD4I CCNGG 1 cut(s) 29
TaiI ACGT 1 cut(s) 50
TaqI TCGA 2 cut(s) 122, 182
TasI AATT 1 cut(s) 133
TauI GCSGC 4 cut(s) 82, 91, 208, 220
TfiI GAWTC 2 cut(s) 124, 184
Tru1I TTAA 1 cut(s) 244
Tru9I TTAA 1 cut(s) 244
TseFI GTSAC 1 cut(s) 48
Tsp45I GTSAC 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 169
Tth111I GACNNNGTC 1 cut(s) 37
VpaK11BI GGWCC 2 cut(s) 4, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.