MD16G1117300.v1.1

Mannosyl-oligosaccharide glucosidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
8324892 .. 8328559
3668 bp
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UTR
Exon/CDS
Intron
MD16G1117300.v1.1.491

Sequence Viewer

Length: 1527 bp
ATGTCAGGAAGTGAAAGAATTGCTCGAAGCAGAGTGAAATCCCACACAGATCATGCCAAGGACGACGATGACTTCGACGGCGTTGATCTCCGTCAGACACAGCCTCCCAAATTGATGCCCCCGCGCAGAGATTCCAGAACCAGAAACCACCACACCTCAGTCGGAACTTTCAACTCCGTCGGTCTCAAACGCACCCTAGGGCTTGGCGTGTTCGCCTTCTTCGTCGCCATGCTTTTGATCCTCGACCTCTTAAACCGTTTTCCAGGTCCTAGGGTTCTTACGCCCATCACTGCTTCCTCAAAGCTCATGGAATCCCCTCACCCTCAGTTTTTTGAAGGTGATGAGGAGAATAGCAAGGAGAGCTTGTATTGGGGAACATATCGCCCTCGCGTTTATCTCGGAATCCGTGCCAGGACGCGTCGATCTTTGATTGCCGGATTAATGTGGATTGGTATGAAGGACGGGCGATATTTGTTGCGCCATGTTTGCCAAGATTCTGATGAGCTGAGCATATATAGTTGGAAGCATCGTAATGACCAAAACTTGGGACATCAAGTCATTGTTGACCATGACATGAACTTGGCTACAAGTTTCTTCCAATCTAAGGGGGAAGACAGCGGCTATGGAGGAGATTGGGCAGTTCGAGTTGATGTGCAGCAAAGCCGAAAGCCTAAGGGGAATGAGGAATTTCGGACAAATGCGGATCTTTTTTTTTATTTGGCTGATGAAGATGGAAATGCTCTAGCTTTAGGTGGAGATACATTGGGCGTTCATAAGAATTATTTCCTTGCATCTGGTTTACGTACAGATGTTGGAAGTTGGCAGCTACATTTAAAATCATTGGATGATTTGGAAGTTCATTATTTTGGTCTTAAGATGCCTCGTATTCACAATTTATCTGATCTTGTCCAGGAATATATTGGACCACAGGTAAGGAAGTTTGGTCGAGTGCAGCTACCTGACATATCCGATGATTCTCCAAATATTCTAATTTTTCAGATTTCTGCAAGGATACCGTTCAAGACTGATTTTGCATACATATCCGGAACTGATTTGGAAAGTTCAAGAGTAGAACAACGTGTCAGCGGCCTCACAGGTCCCTCACTGACCAGTCAACTGATGGCAAAACAAAGAGAATTCGACACAAAATTTGAGAAGAGCTTTAATATGTCTAACAAGGTAGATCAAGTCACCAAGTTCGATAAGCATGCTCCTCCCAGTTTCGCTAAGCAGGTTATAAGCCAAGCTCGCAGTTTCATCCAGAAAAAATGGGAACAGACCCAAAGATTAGTAAAGGATGCTCAAACTGGGGACACACGCACGGTTATTCGTTCTGCAGCTACCGAATATAAGCAGCATCTCTTAAACCAATCTTCAAAGTTGTGGATGGACCACTACCCTGAAGTCCAGAGCGTGACAGAGAAGGCTGCTTCAGCAGCTGCGTACTGGTCCGCAAAATACAACCACATGGTAAAGAACTTGACCCTGATGGGTTATAACATATCAAGCTTTGGTTCCGATAGATGA

Protein Analysis

509

Amino Acids

57.83

Weight (kDa)

9.11

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_63N PF16923 121 - 280 5.9e-32 Glycosyl hydrolase family 63 N-terminal domain
REF PF05755 391 - 503 2.1e-19 Rubber elongation factor protein (REF)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1238, 1497
Acc36I ACCTGC 1 cut(s) 1222
AccB7I CCANNNNNTGG 1 cut(s) 544
AccII CGCG 3 cut(s) 124, 390, 418
AccIII TCCGGA 1 cut(s) 1043
AciI CCGC 5 cut(s) 122, 618, 701, 1086, 1452
AclWI GGATC 2 cut(s) 232, 711
AcsI RAATTY 3 cut(s) 686, 1136, 1148
AcuI CTGAAG 2 cut(s) 1416, 1422
AfaI GTAC 2 cut(s) 805, 1445
AfiI CCNNNNNNNGG 2 cut(s) 544, 604
AflII CTTAAG 1 cut(s) 872
AflIII ACRYGT 2 cut(s) 416, 1078
AgsI TTSAA 5 cut(s) 172, 335, 1021, 1065, 1377
AhdI GACNNNNNGTC 1 cut(s) 554
AjnI CCWGG 3 cut(s) 262, 410, 909
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 2 cut(s) 232, 711
AlwNI CAGNNNCTG 1 cut(s) 1439
Aor13HI TCCGGA 1 cut(s) 1043
AoxI GGCC 1 cut(s) 1087
ApeKI GCWGC 8 cut(s) 655, 823, 952, 1337, 1354, 1427, 1436, 1439
ApoI RAATTY 3 cut(s) 686, 1136, 1148
ArsI GACNNNNNNTTYG 4 cut(s) 56, 88, 1133, 1165
AseI ATTAAT 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 782
AspA2I CCTAGG 2 cut(s) 196, 269
AspLEI GCGC 2 cut(s) 126, 480
AspS9I GGNCC 5 cut(s) 266, 923, 1097, 1390, 1449
AsuHPI GGTGA 3 cut(s) 311, 350, 1183
AvaII GGWCC 5 cut(s) 266, 923, 1097, 1390, 1449
AvrII CCTAGG 2 cut(s) 196, 269
AxyI CCTNAGG 1 cut(s) 672
BbsI GAAGAC 1 cut(s) 618
BbvI GCAGC 8 cut(s) 667, 835, 964, 1349, 1366, 1414, 1426, 1448
BccI CCATC 5 cut(s) 293, 725, 1114, 1381, 1483
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 1190, 1224
BciT130I CCWGG 3 cut(s) 264, 412, 911
BciVI GTATCC 1 cut(s) 1005
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 3 cut(s) 197, 270, 743
BfmI CTRYAG 1 cut(s) 1335
BfrI CTTAAG 1 cut(s) 872
BfuAI ACCTGC 1 cut(s) 1222
BfuI GTATCC 1 cut(s) 1005
BlnI CCTAGG 2 cut(s) 196, 269
BlpI GCTNAGC 2 cut(s) 506, 1227
Bme1390I CCNGG 3 cut(s) 264, 412, 911
Bme18I GGWCC 5 cut(s) 266, 923, 1097, 1390, 1449
BmeRI GACNNNNNGTC 1 cut(s) 554
BmgT120I GGNCC 5 cut(s) 266, 923, 1097, 1390, 1449
BmiI GGNNCC 2 cut(s) 1099, 1516
BmrFI CCNGG 3 cut(s) 264, 412, 911
BmrI ACTGGG 2 cut(s) 1212, 1317
BmsI GCATC 6 cut(s) 105, 535, 800, 867, 1288, 1366
BmuI ACTGGG 2 cut(s) 1212, 1317
BpiI GAAGAC 1 cut(s) 618
Bpu1102I GCTNAGC 2 cut(s) 506, 1227
BsaAI YACGTR 1 cut(s) 803
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 3 cut(s) 57, 196, 269
BsaWI WCCGGW 1 cut(s) 1043
BsaXI ACNNNNNCTCC 4 cut(s) 88, 118, 350, 380
Bsc4I CCNNNNNNNGG 2 cut(s) 544, 604
Bse1I ACTGG 4 cut(s) 1110, 1218, 1312, 1451
Bse21I CCTNAGG 1 cut(s) 672
BseAI TCCGGA 1 cut(s) 1043
BseBI CCWGG 3 cut(s) 264, 412, 911
BseDI CCNNGG 3 cut(s) 57, 196, 269
BseGI GGATG 4 cut(s) 850, 1257, 1303, 1392
BseLI CCNNNNNNNGG 2 cut(s) 544, 604
BseMII CTCAG 3 cut(s) 171, 338, 497
BseNI ACTGG 4 cut(s) 1110, 1218, 1312, 1451
BseRI GAGGAG 3 cut(s) 359, 642, 1203
BseXI GCAGC 8 cut(s) 667, 835, 964, 1349, 1366, 1414, 1426, 1448
BsgI GTGCAG 2 cut(s) 674, 971
Bsh1236I CGCG 3 cut(s) 124, 390, 418
BshFI GGCC 1 cut(s) 1089
BsiSI CCGG 2 cut(s) 435, 1044
BslFI GGGAC 3 cut(s) 561, 1083, 1325
BslI CCNNNNNNNGG 2 cut(s) 544, 604
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 3 cut(s) 561, 1083, 1325
BsnI GGCC 1 cut(s) 1089
Bso31I GGTCTC 1 cut(s) 188
Bsp13I TCCGGA 1 cut(s) 1043
Bsp143I GATC 7 cut(s) 49, 85, 237, 422, 703, 901, 1183
Bsp1720I GCTNAGC 2 cut(s) 506, 1227
BspACI CCGC 5 cut(s) 122, 618, 701, 1086, 1452
BspANI GGCC 1 cut(s) 1089
BspCNI CTCAG 3 cut(s) 170, 337, 498
BspEI TCCGGA 1 cut(s) 1043
BspFNI CGCG 3 cut(s) 124, 390, 418
BspLI GGNNCC 2 cut(s) 1099, 1516
BspMAI CTGCAG 1 cut(s) 1339
BspMI ACCTGC 1 cut(s) 1222
BspPI GGATC 2 cut(s) 232, 711
BspQI GCTCTTC 1 cut(s) 1151
BspTI CTTAAG 1 cut(s) 872
BspTNI GGTCTC 1 cut(s) 188
BsrI ACTGG 4 cut(s) 1110, 1218, 1312, 1451
BssECI CCNNGG 3 cut(s) 57, 196, 269
BssMI GATC 7 cut(s) 49, 85, 237, 422, 703, 901, 1183
BssT1I CCWWGG 3 cut(s) 57, 196, 269
Bst2UI CCWGG 3 cut(s) 264, 412, 911
Bst4CI ACNGT 3 cut(s) 257, 1017, 1324
Bst6I CTCTTC 1 cut(s) 1151
BstAFI CTTAAG 1 cut(s) 872
BstBAI YACGTR 1 cut(s) 803
BstC8I GCNNGC 2 cut(s) 1209, 1249
BstDEI CTNAG 6 cut(s) 157, 324, 506, 603, 672, 1227
BstF5I GGATG 4 cut(s) 850, 1257, 1303, 1392
BstFNI CGCG 3 cut(s) 124, 390, 418
BstHHI GCGC 2 cut(s) 126, 480
BstKTI GATC 7 cut(s) 52, 88, 240, 425, 706, 904, 1186
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 7 cut(s) 49, 85, 237, 422, 703, 901, 1183
BstMWI GCNNNNNNNGC 5 cut(s) 360, 486, 1248, 1433, 1436
BstNI CCWGG 3 cut(s) 264, 412, 911
BstNSI RCATGY 1 cut(s) 1211
BstSCI CCNGG 3 cut(s) 262, 410, 909
BstSFI CTRYAG 1 cut(s) 1335
BstSNI TACGTA 1 cut(s) 803
BstUI CGCG 3 cut(s) 124, 390, 418
BstV1I GCAGC 8 cut(s) 667, 835, 964, 1349, 1366, 1414, 1426, 1448
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 1 cut(s) 703
BstYI RGATCY 1 cut(s) 703
Bsu36I CCTNAGG 1 cut(s) 672
BsuI GTATCC 1 cut(s) 1005
BsuRI GGCC 1 cut(s) 1089
BtsCI GGATG 4 cut(s) 850, 1257, 1303, 1392
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 288, 1103
BveI ACCTGC 1 cut(s) 1222
Cac8I GCNNGC 2 cut(s) 1209, 1249
CaiI CAGNNNCTG 1 cut(s) 1439
CfoI GCGC 2 cut(s) 126, 480
Cfr13I GGNCC 5 cut(s) 266, 923, 1097, 1390, 1449
CseI GACGC 2 cut(s) 407, 424
Csp6I GTAC 2 cut(s) 804, 1444
CviAII CATG 8 cut(s) 53, 229, 307, 482, 569, 574, 1208, 1468
CviQI GTAC 2 cut(s) 804, 1444
DdeI CTNAG 6 cut(s) 157, 324, 506, 603, 672, 1227
DpnI GATC 7 cut(s) 51, 87, 239, 424, 705, 903, 1185
DpnII GATC 7 cut(s) 49, 85, 237, 422, 703, 901, 1183
DraI TTTAAA 1 cut(s) 834
DriI GACNNNNNGTC 1 cut(s) 554
Eam1104I CTCTTC 1 cut(s) 1151
Eam1105I GACNNNNNGTC 1 cut(s) 554
EarI CTCTTC 1 cut(s) 1151
Eco105I TACGTA 1 cut(s) 803
Eco130I CCWWGG 3 cut(s) 57, 196, 269
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 5 cut(s) 266, 923, 1097, 1390, 1449
Eco57I CTGAAG 2 cut(s) 1416, 1422
Eco81I CCTNAGG 1 cut(s) 672
EcoO109I RGGNCCY 2 cut(s) 266, 1097
EcoRI GAATTC 1 cut(s) 1136
EcoRII CCWGG 3 cut(s) 262, 410, 909
EcoT14I CCWWGG 3 cut(s) 57, 196, 269
ErhI CCWWGG 3 cut(s) 57, 196, 269
FaeI CATG 8 cut(s) 56, 232, 310, 485, 572, 577, 1211, 1471
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 3 cut(s) 561, 1083, 1325
FatI CATG 8 cut(s) 52, 228, 306, 481, 568, 573, 1207, 1467
FauI CCCGC 1 cut(s) 129
FokI GGATG 4 cut(s) 857, 1244, 1310, 1399
FspBI CTAG 3 cut(s) 197, 270, 743
GlaI GCGC 2 cut(s) 125, 479
HaeIII GGCC 1 cut(s) 1089
HapII CCGG 2 cut(s) 435, 1044
HgaI GACGC 2 cut(s) 407, 424
HhaI GCGC 2 cut(s) 126, 480
Hin1II CATG 8 cut(s) 56, 232, 310, 485, 572, 577, 1211, 1471
Hin6I GCGC 2 cut(s) 124, 478
HinP1I GCGC 2 cut(s) 124, 478
HincII GTYRAC 2 cut(s) 565, 1115
HindII GTYRAC 2 cut(s) 565, 1115
HindIII AAGCTT 1 cut(s) 1507
HinfI GANTC 5 cut(s) 131, 311, 402, 494, 974
HpaII CCGG 2 cut(s) 435, 1044
HphI GGTGA 3 cut(s) 311, 350, 1183
Hpy166II GTNNAC 3 cut(s) 565, 800, 1115
Hpy188I TCNGA 9 cut(s) 96, 164, 401, 499, 693, 901, 970, 999, 1519
Hpy188III TCNNGA 7 cut(s) 6, 135, 1021, 1044, 1065, 1261, 1408
Hpy8I GTNNAC 3 cut(s) 565, 800, 1115
Hpy99I CGWCG 5 cut(s) 68, 80, 182, 227, 423
HpyAV CCTTC 4 cut(s) 226, 329, 451, 1417
HpyCH4III ACNGT 3 cut(s) 257, 1017, 1324
HpyCH4IV ACGT 2 cut(s) 802, 1078
HpyCH4V TGCA 6 cut(s) 655, 791, 952, 1007, 1034, 1337
HpyF10VI GCNNNNNNNGC 5 cut(s) 360, 486, 1248, 1433, 1436
HpyF3I CTNAG 6 cut(s) 157, 324, 506, 603, 672, 1227
HpySE526I ACGT 2 cut(s) 802, 1078
Hsp92II CATG 8 cut(s) 56, 232, 310, 485, 572, 577, 1211, 1471
HspAI GCGC 2 cut(s) 124, 478
Kpn2I TCCGGA 1 cut(s) 1043
Kzo9I GATC 7 cut(s) 49, 85, 237, 422, 703, 901, 1183
LguI GCTCTTC 1 cut(s) 1151
LmnI GCTCC 1 cut(s) 1216
Lsp1109I GCAGC 8 cut(s) 667, 835, 964, 1349, 1366, 1414, 1426, 1448
LweI GCATC 6 cut(s) 105, 535, 800, 867, 1288, 1366
MaeI CTAG 3 cut(s) 197, 270, 743
MaeII ACGT 2 cut(s) 802, 1078
MaeIII GTNAC 2 cut(s) 1189, 1414
MalI GATC 7 cut(s) 51, 87, 239, 424, 705, 903, 1185
MboI GATC 7 cut(s) 49, 85, 237, 422, 703, 901, 1183
MboII GAAGA 6 cut(s) 211, 586, 623, 740, 1168, 1365
MflI RGATCY 1 cut(s) 703
MluCI AATT 8 cut(s) 18, 110, 686, 778, 892, 990, 1136, 1148
MluI ACGCGT 1 cut(s) 416
MmeI TCCRAC 3 cut(s) 142, 500, 793
MroI TCCGGA 1 cut(s) 1043
MroXI GAANNNNTTC 1 cut(s) 782
MseI TTAA 6 cut(s) 251, 440, 833, 873, 1164, 1364
MslI CAYNNNNRTG 1 cut(s) 531
MspA1I CMGCKG 3 cut(s) 618, 1086, 1439
MspCI CTTAAG 1 cut(s) 872
MspI CCGG 2 cut(s) 435, 1044
MspR9I CCNGG 3 cut(s) 264, 412, 911
MvaI CCWGG 3 cut(s) 264, 412, 911
MvnI CGCG 3 cut(s) 124, 390, 418
MwoI GCNNNNNNNGC 5 cut(s) 360, 486, 1248, 1433, 1436
NdeII GATC 7 cut(s) 49, 85, 237, 422, 703, 901, 1183
NlaIII CATG 8 cut(s) 56, 232, 310, 485, 572, 577, 1211, 1471
NlaIV GGNNCC 2 cut(s) 1099, 1516
NmuCI GTSAC 2 cut(s) 1189, 1414
NspI RCATGY 1 cut(s) 1211
PaeI GCATGC 1 cut(s) 1211
PciSI GCTCTTC 1 cut(s) 1151
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 219
PdmI GAANNNNTTC 1 cut(s) 782
PfeI GAWTC 5 cut(s) 131, 311, 402, 494, 974
PflMI CCANNNNNTGG 1 cut(s) 544
PfoI TCCNGGA 1 cut(s) 909
Ppu21I YACGTR 1 cut(s) 803
PpuMI RGGWCCY 2 cut(s) 266, 1097
PshBI ATTAAT 1 cut(s) 440
PsiI TTATAA 2 cut(s) 1238, 1497
Psp5II RGGWCCY 2 cut(s) 266, 1097
Psp6I CCWGG 3 cut(s) 262, 410, 909
PspGI CCWGG 3 cut(s) 262, 410, 909
PspN4I GGNNCC 2 cut(s) 1099, 1516
PspPI GGNCC 5 cut(s) 266, 923, 1097, 1390, 1449
PspPPI RGGWCCY 2 cut(s) 266, 1097
PstI CTGCAG 1 cut(s) 1339
PstNI CAGNNNCTG 1 cut(s) 1439
PsuI RGATCY 1 cut(s) 703
PvuII CAGCTG 1 cut(s) 1439
RsaI GTAC 2 cut(s) 805, 1445
RsaNI GTAC 2 cut(s) 804, 1444
RseI CAYNNNNRTG 1 cut(s) 531
SapI GCTCTTC 1 cut(s) 1151
SaqAI TTAA 6 cut(s) 251, 440, 833, 873, 1164, 1364
Sau3AI GATC 7 cut(s) 49, 85, 237, 422, 703, 901, 1183
Sau96I GGNCC 5 cut(s) 266, 923, 1097, 1390, 1449
ScrFI CCNGG 3 cut(s) 264, 412, 911
SfaNI GCATC 6 cut(s) 105, 535, 800, 867, 1288, 1366
SfcI CTRYAG 1 cut(s) 1335
SinI GGWCC 5 cut(s) 266, 923, 1097, 1390, 1449
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
SnaBI TACGTA 1 cut(s) 803
SphI GCATGC 1 cut(s) 1211
Sse9I AATT 8 cut(s) 18, 110, 686, 778, 892, 990, 1136, 1148
SsiI CCGC 5 cut(s) 122, 618, 701, 1086, 1452
SspI AATATT 1 cut(s) 985
SspMI CTAG 3 cut(s) 197, 270, 743
StyD4I CCNGG 3 cut(s) 262, 410, 909
StyI CCWWGG 3 cut(s) 57, 196, 269
TaaI ACNGT 3 cut(s) 257, 1017, 1324
TaiI ACGT 2 cut(s) 805, 1081
TaqI TCGA 8 cut(s) 25, 75, 243, 421, 643, 946, 1140, 1200
TaqII GACCGA 1 cut(s) 170
TasI AATT 8 cut(s) 18, 110, 686, 778, 892, 990, 1136, 1148
TauI GCSGC 2 cut(s) 621, 1089
TfiI GAWTC 5 cut(s) 131, 311, 402, 494, 974
Tru1I TTAA 6 cut(s) 251, 440, 833, 873, 1164, 1364
Tru9I TTAA 6 cut(s) 251, 440, 833, 873, 1164, 1364
TscAI CASTG 2 cut(s) 295, 1110
TseFI GTSAC 2 cut(s) 1189, 1414
TseI GCWGC 8 cut(s) 655, 823, 952, 1337, 1354, 1427, 1436, 1439
Tsp45I GTSAC 2 cut(s) 1189, 1414
TspDTI ATGAA 6 cut(s) 470, 590, 741, 761, 848, 1246
TspGWI ACGGA 3 cut(s) 80, 166, 395
TspRI CASTG 2 cut(s) 295, 1110
Van91I CCANNNNNTGG 1 cut(s) 544
Vha464I CTTAAG 1 cut(s) 872
VpaK11BI GGWCC 5 cut(s) 266, 923, 1097, 1390, 1449
VspI ATTAAT 1 cut(s) 440
XapI RAATTY 3 cut(s) 686, 1136, 1148
XceI RCATGY 1 cut(s) 1211
XcmI CCANNNNNNNNNTGG 2 cut(s) 917, 1117
XmaJI CCTAGG 2 cut(s) 196, 269
XmnI GAANNNNTTC 1 cut(s) 782
XspI CTAG 3 cut(s) 197, 270, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.