MD16G1213800.v1.1

pyridoxal biosynthesis protein PDX1.2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0028555
Physical Location & Seq
Reverse (-)
20549725 .. 20549913
189 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1213800.v1.1.491

Sequence Viewer

Length: 189 bp
ATGGGTCAGATTAGGCTGCTCAACAACATGGAAGACGATGAAATCTTCGCGTTTTCGAAGACAATCCAAGCGCCATACGACCTGGTTGCTCAATCCAAGCAAATGGGTCGGCTGCCTATGGTGCTATTCGCCACCGGTGGCATCGTGACGCCGGCCGACGCAGCGCTGACGATGCAGTTTGGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
ko00750 map00750
Pfam Domains
Protein Families
SOR_SNZ

Protein Analysis

63

Amino Acids

6.78

Weight (kDa)

4.53

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOR_SNZ PF01680 2 - 44 4.5e-08 SOR/SNZ family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028555)

Species Orthologous Gene IDs
malus_domestica MD16G1213800.v1.1
prunus_persica Prupe.6G216600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 149
AfeI AGCGCT 1 cut(s) 165
AgeI ACCGGT 1 cut(s) 134
AjnI CCWGG 1 cut(s) 81
Aor51HI AGCGCT 1 cut(s) 165
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 3 cut(s) 16, 112, 161
AsiGI ACCGGT 1 cut(s) 134
AspLEI GCGC 2 cut(s) 73, 166
AsuII TTCGAA 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 39, 65
BbvI GCAGC 3 cut(s) 3, 99, 173
BcgI CGANNNNNNTGC 4 cut(s) 68, 89, 102, 123
BciT130I CCWGG 1 cut(s) 83
BfoI RGCGCY 2 cut(s) 74, 167
BisI GCNGC 3 cut(s) 17, 113, 162
BlsI GCNGC 3 cut(s) 18, 114, 163
Bme1390I CCNGG 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 2 cut(s) 150, 162
BpiI GAAGAC 2 cut(s) 39, 65
Bpu14I TTCGAA 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 134
Bse118I RCCGGY 2 cut(s) 134, 151
BseBI CCWGG 1 cut(s) 83
BseX3I CGGCCG 1 cut(s) 153
BseXI GCAGC 3 cut(s) 3, 99, 173
Bsh1236I CGCG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 155
BshTI ACCGGT 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 156
BsiSI CCGG 2 cut(s) 135, 152
BsnI GGCC 1 cut(s) 155
Bsp119I TTCGAA 1 cut(s) 56
BspANI GGCC 1 cut(s) 155
BspFNI CGCG 1 cut(s) 50
BspT104I TTCGAA 1 cut(s) 56
BsrFI RCCGGY 2 cut(s) 134, 151
BssAI RCCGGY 2 cut(s) 134, 151
BssNI GRCGYC 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 153
BstFNI CGCG 1 cut(s) 50
BstH2I RGCGCY 2 cut(s) 74, 167
BstHHI GCGC 2 cut(s) 73, 166
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 3 cut(s) 121, 161, 172
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 3 cut(s) 3, 99, 173
BstV2I GAAGAC 2 cut(s) 39, 65
BstXI CCANNNNNNTGG 1 cut(s) 103
BstZI CGGCCG 1 cut(s) 153
BsuRI GGCC 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 153
CfoI GCGC 2 cut(s) 73, 166
Cfr10I RCCGGY 2 cut(s) 134, 151
CseI GACGC 2 cut(s) 157, 167
CsiI ACCWGGT 1 cut(s) 81
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 1 cut(s) 28
CviJI RGCY 3 cut(s) 16, 112, 155
CviKI_1 RGCY 3 cut(s) 16, 112, 155
EaeI YGGCCR 1 cut(s) 153
EagI CGGCCG 1 cut(s) 153
EclXI CGGCCG 1 cut(s) 153
Eco47III AGCGCT 1 cut(s) 165
Eco52I CGGCCG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 31
FaiI YATR 3 cut(s) 29, 76, 119
FatI CATG 1 cut(s) 27
Fnu4HI GCNGC 3 cut(s) 17, 113, 162
Fsp4HI GCNGC 3 cut(s) 17, 113, 162
GlaI GCGC 2 cut(s) 72, 165
GluI GCNGC 3 cut(s) 17, 113, 162
HaeII RGCGCY 2 cut(s) 74, 167
HaeIII GGCC 1 cut(s) 155
HapII CCGG 2 cut(s) 135, 152
HgaI GACGC 2 cut(s) 157, 167
HhaI GCGC 2 cut(s) 73, 166
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 2 cut(s) 71, 164
HinP1I GCGC 2 cut(s) 71, 164
HpaII CCGG 2 cut(s) 135, 152
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 161, 172
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 2 cut(s) 71, 164
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
LpnPI CCDG 4 cut(s) 68, 95, 148, 165
Lsp1109I GCAGC 3 cut(s) 3, 99, 173
LweI GCATC 2 cut(s) 150, 162
MabI ACCWGGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 145
MboII GAAGA 3 cut(s) 37, 44, 70
MroNI GCCGGC 1 cut(s) 151
MspI CCGG 2 cut(s) 135, 152
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 121, 161, 172
NaeI GCCGGC 1 cut(s) 153
NgoMIV GCCGGC 1 cut(s) 151
NlaIII CATG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 145
NspV TTCGAA 1 cut(s) 56
PdiI GCCGGC 1 cut(s) 153
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 3 cut(s) 18, 114, 163
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
SatI GCNGC 3 cut(s) 17, 113, 162
ScrFI CCNGG 1 cut(s) 83
SetI ASST 1 cut(s) 84
SexAI ACCWGGT 1 cut(s) 81
SfaNI GCATC 2 cut(s) 150, 162
SfuI TTCGAA 1 cut(s) 56
SgeI CNNG 9 cut(s) 40, 61, 80, 94, 95, 109, 147, 157, 164
SgrAI CRCCGGYG 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 81
TaqI TCGA 1 cut(s) 56
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 3 cut(s) 16, 112, 161
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.