MD16G1217700.v1.1

FAD binding domain of DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0028525
Physical Location & Seq
Reverse (-)
21510549 .. 21512457
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1217700.v1.1.491

Sequence Viewer

Length: 918 bp
ATGAGAGAGCTATGGGCAACTGGGTGGATACAAAACCGAATAAGAGTGATCGTTTCAAGTTTCACTGTGAAAGTTCTGCTTCTTCCCTGGAGATGGGGAATGAAATATTTCTGGGACACGCTGATGGATGCCGATTTAGAAAGCGATATCCTTGGTTGGCAGTATATCTCAGGGAGCTTACCAGATGGCCATGAGCTTGAGCATTTGGACAGTCCAGAAGCTCAAGGCTCAAAATTTGATCCAGAGGGTGAATATGTAAGGCATTGGCTGCCTGAGTTAGCACGTTTGCCAACCGAGTGGATCCATCATCCTTGGGAATCACCTGATTCTGTGCTTAAATTCTCAGGTGTAGAGTTTGGATTTAACTATTCGAAACCTATCATTGAGCTAGATTTGGCTAGAGAACGCTTCACGAAGGCCATATTCAAGATGTGGGATATGGAAGCAGCAGCAAAGGCTGCAAGTGCAAATGGCACAGATGAAGTTGTTGTTGACAACTCTGCCAGTGAAGATTTGCCTATCCCAAAGGTGATATTAAAGAAAACCTCTCCTTGTCCTACTGACTCCTCTAATGATCAGAAGGTACCGACACGTCAAAATTCCAAGAGCAATCAATTTAATAGGAAGAGATCGAAATTTATGCAAGACGAAAGCCCACTCCCAGATAATCGGCACAATCCTAAGAAAGCTGGGCCCTCGAGAACAAATGAAGGCGTGAGCTCCACTGCCAAATCTTCAATGTCTAAGAAGCAGACAAATAGCAGAAATTCATTTTCTGTTCCACAGTCATATTCCGCATCAGAAGGCAACCCTTTTATGGAGTGTGAATCTTCTGAGATGCAGCAGTCATGGCAAGAACAGATTAACATGGAGCAGACTTCAAGGAAAAATGGAGCCGCGGAAGATGAAGGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0001101 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0006139 GO:0006325 GO:0006338 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008144 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009606 GO:0009607 GO:0009615 GO:0009628 GO:0009637 GO:0009638 GO:0009642 GO:0009645 GO:0009646 GO:0009648 GO:0009719 GO:0009725 GO:0009785 GO:0009791 GO:0009881 GO:0009882 GO:0009888 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010033 GO:0010035 GO:0010073 GO:0010075 GO:0010118 GO:0010228 GO:0010244 GO:0010617 GO:0014070 GO:0016043 GO:0016604 GO:0017076 GO:0019222 GO:0019637 GO:0019725 GO:0022414 GO:0022603 GO:0023052 GO:0030003 GO:0030522 GO:0030554 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0034641 GO:0035639 GO:0036094 GO:0038023 GO:0040008 GO:0042221 GO:0042592 GO:0042726 GO:0042752 GO:0042802 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048037 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048522 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050660 GO:0050662 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051094 GO:0051186 GO:0051239 GO:0051240 GO:0051276 GO:0051480 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055086 GO:0060089 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071949 GO:0072387 GO:0072503 GO:0072507 GO:0097159 GO:0097367 GO:0098542 GO:0098771 GO:0104004 GO:1900618 GO:1901265 GO:1901360 GO:1901363 GO:1901371 GO:1901564 GO:1901700 GO:1902347 GO:1905421 GO:2000024 GO:2000026 GO:2000028 GO:2000241 GO:2000243 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

306

Amino Acids

34.69

Weight (kDa)

5.41

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_7 PF03441 1 - 141 1.4e-46 FAD binding domain of DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028525)

Species Orthologous Gene IDs
malus_domestica MD16G1217700.v1.1
pyrus_communis pycom16g18210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 583
AccB1I GGYRCC 1 cut(s) 583
AccII CGCG 1 cut(s) 899
AciI CCGC 3 cut(s) 795, 897, 899
AclWI GGATC 3 cut(s) 233, 295, 308
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 5 cut(s) 233, 338, 598, 635, 766
AfaI GTAC 1 cut(s) 585
AfiI CCNNNNNNNGG 2 cut(s) 93, 817
AflIII ACRYGT 1 cut(s) 590
AgsI TTSAA 4 cut(s) 57, 427, 738, 882
AjiI CACGTC 1 cut(s) 593
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 7 cut(s) 10, 177, 196, 221, 388, 689, 720
AluI AGCT 7 cut(s) 10, 177, 196, 221, 388, 689, 720
Alw21I GWGCWC 1 cut(s) 722
AlwI GGATC 3 cut(s) 233, 295, 308
Ama87I CYCGRG 1 cut(s) 697
AoxI GGCC 4 cut(s) 187, 417, 692, 910
ApaI GGGCCC 1 cut(s) 696
ApeKI GCWGC 5 cut(s) 268, 446, 449, 458, 841
ApoI RAATTY 5 cut(s) 233, 338, 598, 635, 766
Asp700I GAANNNNTTC 1 cut(s) 107
Asp718I GGTACC 1 cut(s) 583
AspS9I GGNCC 2 cut(s) 692, 693
AsuHPI GGTGA 3 cut(s) 260, 312, 541
AsuII TTCGAA 1 cut(s) 371
AvaI CYCGRG 1 cut(s) 697
BaeGI GKGCMC 1 cut(s) 696
BalI TGGCCA 1 cut(s) 189
BamHI GGATCC 1 cut(s) 300
BanI GGYRCC 1 cut(s) 583
BanII GRGCYC 2 cut(s) 696, 722
Bbv12I GWGCWC 1 cut(s) 722
BbvI GCAGC 5 cut(s) 255, 445, 458, 461, 853
BccI CCATC 4 cut(s) 87, 118, 179, 312
BcgI CGANNNNNNTGC 2 cut(s) 622, 656
BciT130I CCWGG 1 cut(s) 88
BciVI GTATCC 1 cut(s) 21
BclI TGATCA 1 cut(s) 574
BfaI CTAG 2 cut(s) 389, 399
BfuI GTATCC 1 cut(s) 21
BisI GCNGC 6 cut(s) 269, 447, 450, 459, 842, 897
BlsI GCNGC 6 cut(s) 270, 448, 451, 460, 843, 898
Bme1390I CCNGG 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 697
BmgBI CACGTC 1 cut(s) 593
BmgT120I GGNCC 2 cut(s) 692, 693
BmiI GGNNCC 4 cut(s) 302, 585, 694, 895
BmrFI CCNGG 1 cut(s) 88
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 3 cut(s) 118, 806, 828
BmuI ACTGGG 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 109
Bpu14I TTCGAA 1 cut(s) 371
BpuEI CTTGAG 2 cut(s) 207, 218
BsaJI CCNNGG 4 cut(s) 86, 151, 311, 897
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 817
Bse1I ACTGG 2 cut(s) 25, 504
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 4 cut(s) 86, 151, 311, 897
BseGI GGATG 2 cut(s) 133, 307
BseLI CCNNNNNNNGG 2 cut(s) 93, 817
BseMII CTCAG 4 cut(s) 183, 264, 357, 825
BseNI ACTGG 2 cut(s) 25, 504
BseRI GAGGAG 1 cut(s) 556
BseSI GKGCMC 1 cut(s) 696
BseXI GCAGC 5 cut(s) 255, 445, 458, 461, 853
BseYI CCCAGC 1 cut(s) 689
Bsh1236I CGCG 1 cut(s) 899
BshFI GGCC 4 cut(s) 189, 419, 694, 912
BshNI GGYRCC 1 cut(s) 583
BsiHKAI GWGCWC 1 cut(s) 722
BsiHKCI CYCGRG 1 cut(s) 697
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 93, 817
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 4 cut(s) 189, 419, 694, 912
BsoBI CYCGRG 1 cut(s) 697
Bsp119I TTCGAA 1 cut(s) 371
Bsp120I GGGCCC 1 cut(s) 692
Bsp1286I GDGCHC 2 cut(s) 696, 722
Bsp143I GATC 5 cut(s) 48, 238, 300, 574, 629
BspACI CCGC 3 cut(s) 795, 897, 899
BspANI GGCC 4 cut(s) 189, 419, 694, 912
BspCNI CTCAG 4 cut(s) 182, 265, 356, 826
BspFNI CGCG 1 cut(s) 899
BspLI GGNNCC 4 cut(s) 302, 585, 694, 895
BspPI GGATC 3 cut(s) 233, 295, 308
BspT104I TTCGAA 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 583
BsrI ACTGG 2 cut(s) 25, 504
BssECI CCNNGG 4 cut(s) 86, 151, 311, 897
BssMI GATC 5 cut(s) 48, 238, 300, 574, 629
BssT1I CCWWGG 2 cut(s) 151, 311
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 3 cut(s) 67, 212, 786
Bst6I CTCTTC 1 cut(s) 620
BstAPI GCANNNNNTGC 2 cut(s) 268, 458
BstBI TTCGAA 1 cut(s) 371
BstDEI CTNAG 6 cut(s) 169, 273, 343, 681, 744, 834
BstDSI CCRYGG 1 cut(s) 897
BstF5I GGATG 2 cut(s) 133, 307
BstFNI CGCG 1 cut(s) 899
BstKTI GATC 5 cut(s) 51, 241, 303, 577, 632
BstMBI GATC 5 cut(s) 48, 238, 300, 574, 629
BstMWI GCNNNNNNNGC 5 cut(s) 268, 455, 458, 464, 850
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstSLI GKGCMC 1 cut(s) 696
BstUI CGCG 1 cut(s) 899
BstV1I GCAGC 5 cut(s) 255, 445, 458, 461, 853
BstX2I RGATCY 1 cut(s) 300
BstXI CCANNNNNNTGG 1 cut(s) 297
BstYI RGATCY 1 cut(s) 300
BsuI GTATCC 1 cut(s) 21
BsuRI GGCC 4 cut(s) 189, 419, 694, 912
BtgI CCRYGG 1 cut(s) 897
BtrI CACGTC 1 cut(s) 593
BtsCI GGATG 2 cut(s) 133, 307
BtsI GCAGTG 1 cut(s) 723
BtsIMutI CAGTG 3 cut(s) 63, 511, 723
Cfr13I GGNCC 2 cut(s) 692, 693
Cfr42I CCGCGG 1 cut(s) 900
Csp6I GTAC 1 cut(s) 584
CviAII CATG 3 cut(s) 191, 849, 868
CviQI GTAC 1 cut(s) 584
DdeI CTNAG 6 cut(s) 169, 273, 343, 681, 744, 834
DpnI GATC 5 cut(s) 50, 240, 302, 576, 631
DpnII GATC 5 cut(s) 48, 238, 300, 574, 629
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Ecl136II GAGCTC 1 cut(s) 720
Eco130I CCWWGG 2 cut(s) 151, 311
Eco147I AGGCCT 1 cut(s) 912
Eco24I GRGCYC 2 cut(s) 696, 722
Eco32I GATATC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 720
Eco88I CYCGRG 1 cut(s) 697
EcoICRI GAGCTC 1 cut(s) 720
EcoO109I RGGNCCY 1 cut(s) 693
EcoRII CCWGG 1 cut(s) 86
EcoRV GATATC 1 cut(s) 148
EcoT14I CCWWGG 2 cut(s) 151, 311
EcoT38I GRGCYC 2 cut(s) 696, 722
ErhI CCWWGG 2 cut(s) 151, 311
FaeI CATG 3 cut(s) 194, 852, 871
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FaqI GGGAC 1 cut(s) 128
FatI CATG 3 cut(s) 190, 848, 867
FbaI TGATCA 1 cut(s) 574
Fnu4HI GCNGC 6 cut(s) 269, 447, 450, 459, 842, 897
FokI GGATG 2 cut(s) 140, 294
FriOI GRGCYC 2 cut(s) 696, 722
Fsp4HI GCNGC 6 cut(s) 269, 447, 450, 459, 842, 897
FspBI CTAG 2 cut(s) 389, 399
GluI GCNGC 6 cut(s) 269, 447, 450, 459, 842, 897
GsaI CCCAGC 1 cut(s) 693
GsuI CTGGAG 1 cut(s) 109
HaeIII GGCC 4 cut(s) 189, 419, 694, 912
Hin1II CATG 3 cut(s) 194, 852, 871
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 4 cut(s) 317, 326, 563, 827
HphI GGTGA 3 cut(s) 260, 312, 541
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 4 cut(s) 579, 802, 835, 917
Hpy188III TCNNGA 5 cut(s) 215, 242, 412, 427, 699
Hpy8I GTNNAC 1 cut(s) 493
HpyAV CCTTC 5 cut(s) 409, 574, 704, 797, 902
HpyCH4III ACNGT 3 cut(s) 67, 212, 786
HpyCH4IV ACGT 2 cut(s) 283, 592
HpyCH4V TGCA 4 cut(s) 461, 467, 643, 841
HpyF10VI GCNNNNNNNGC 5 cut(s) 268, 455, 458, 464, 850
HpyF3I CTNAG 6 cut(s) 169, 273, 343, 681, 744, 834
HpySE526I ACGT 2 cut(s) 283, 592
Hsp92II CATG 3 cut(s) 194, 852, 871
KpnI GGTACC 1 cut(s) 587
Ksp22I TGATCA 1 cut(s) 574
KspI CCGCGG 1 cut(s) 900
Kzo9I GATC 5 cut(s) 48, 238, 300, 574, 629
LmnI GCTCC 4 cut(s) 174, 725, 871, 893
Lsp1109I GCAGC 5 cut(s) 255, 445, 458, 461, 853
LweI GCATC 3 cut(s) 118, 806, 828
MaeI CTAG 2 cut(s) 389, 399
MaeII ACGT 2 cut(s) 283, 592
MalI GATC 5 cut(s) 50, 240, 302, 576, 631
MboI GATC 5 cut(s) 48, 238, 300, 574, 629
MboII GAAGA 6 cut(s) 74, 521, 637, 726, 822, 914
MflI RGATCY 1 cut(s) 300
MhlI GDGCHC 2 cut(s) 696, 722
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 6 cut(s) 233, 338, 598, 614, 635, 766
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 1 cut(s) 557
MnlI CCTC 4 cut(s) 238, 556, 577, 706
Mox20I TGGCCA 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 107
MscI TGGCCA 1 cut(s) 189
MseI TTAA 5 cut(s) 336, 363, 536, 618, 864
MslI CAYNNNNRTG 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 899
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
MvnI CGCG 1 cut(s) 899
MwoI GCNNNNNNNGC 5 cut(s) 268, 455, 458, 464, 850
NdeII GATC 5 cut(s) 48, 238, 300, 574, 629
NlaIII CATG 3 cut(s) 194, 852, 871
NlaIV GGNNCC 4 cut(s) 302, 585, 694, 895
NspV TTCGAA 1 cut(s) 371
PaeR7I CTCGAG 1 cut(s) 697
PceI AGGCCT 1 cut(s) 912
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 3 cut(s) 317, 326, 827
PkrI GCNGC 6 cut(s) 270, 448, 451, 460, 843, 898
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
Psp124BI GAGCTC 1 cut(s) 722
Psp6I CCWGG 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 4 cut(s) 302, 585, 694, 895
PspOMI GGGCCC 1 cut(s) 692
PspPI GGNCC 2 cut(s) 692, 693
PsuI RGATCY 1 cut(s) 300
RsaI GTAC 1 cut(s) 585
RsaNI GTAC 1 cut(s) 584
RseI CAYNNNNRTG 1 cut(s) 122
SacI GAGCTC 1 cut(s) 722
SacII CCGCGG 1 cut(s) 900
SaqAI TTAA 5 cut(s) 336, 363, 536, 618, 864
SatI GCNGC 6 cut(s) 269, 447, 450, 459, 842, 897
Sau3AI GATC 5 cut(s) 48, 238, 300, 574, 629
Sau96I GGNCC 2 cut(s) 692, 693
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 2 cut(s) 696, 722
SfaNI GCATC 3 cut(s) 118, 806, 828
Sfr274I CTCGAG 1 cut(s) 697
Sfr303I CCGCGG 1 cut(s) 900
SfuI TTCGAA 1 cut(s) 371
SgrBI CCGCGG 1 cut(s) 900
SlaI CTCGAG 1 cut(s) 697
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 3 cut(s) 197, 222, 697
SmoI CTYRAG 3 cut(s) 197, 222, 697
Sse9I AATT 6 cut(s) 233, 338, 598, 614, 635, 766
SseBI AGGCCT 1 cut(s) 912
SsiI CCGC 3 cut(s) 795, 897, 899
SspI AATATT 1 cut(s) 107
SspMI CTAG 2 cut(s) 389, 399
SstI GAGCTC 1 cut(s) 722
StuI AGGCCT 1 cut(s) 912
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 2 cut(s) 151, 311
TaaI ACNGT 3 cut(s) 67, 212, 786
TaiI ACGT 2 cut(s) 286, 595
TaqI TCGA 3 cut(s) 371, 632, 698
TasI AATT 6 cut(s) 233, 338, 598, 614, 635, 766
TauI GCSGC 1 cut(s) 899
TfiI GAWTC 3 cut(s) 317, 326, 827
Tru1I TTAA 5 cut(s) 336, 363, 536, 618, 864
Tru9I TTAA 5 cut(s) 336, 363, 536, 618, 864
TscAI CASTG 3 cut(s) 70, 511, 730
TseI GCWGC 5 cut(s) 268, 446, 449, 458, 841
TspDTI ATGAA 4 cut(s) 116, 495, 723, 759
TspRI CASTG 3 cut(s) 70, 511, 730
XapI RAATTY 5 cut(s) 233, 338, 598, 635, 766
XhoI CTCGAG 1 cut(s) 697
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 2 cut(s) 389, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.