Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0028770

Physical Location & Seq

Genomic Coordinates Reverse (-)

2617735 .. 2618350

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1037100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCTGGAAGAGAAGAGAAGATTGACCAATATTGTTTTGCTTGCTTCTTGTTTCCTCCTAATGATCAGAACTTTTATGCTGCTGTTGGCCAAACATTCTTTGGGGAACAGCCAACCCCACCAACAAGTATCATTGTGGCGGATCTTAAAAGAGAATATACTAGTTGGAAGCACGTCGAGGGCACACACTGGCATACCCGATATAATCACCTTGTGAATTATGGTGCAGGTTATTATAGCTACTTGTATGCGAAATGTTTTGCGGCAACGATATGGCTGAAGCTGTGTGAGGAGGATCCATTGTCATTAGCTACAGGAAGTGCTTTAAGACTGAAGTTGTTACAGTATGGGGGAGCGAAAGAAGCAGCTGATTTGTTAAATGGTCTTGTCGGAGGTGGAGGAGGAGGAGATGGTGGGATTATTGTAAGGGATTGTGATGGAGGAGGAAAGGTTCCTCATACTACTTGTCTTTGTACTGAAATGAACACATTAAGGAACCAGTTGATGAATGTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008238 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

173

Amino Acids

18.91

Weight (kDa)

5.92

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M3	PF01432	25 - 128	1.8e-17	Peptidase family M3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0028770)

Species	Orthologous Gene IDs
malus_domestica	MD17G1037100.v1.1
rosa_multiflora	Rmu_sc0003145.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	218
AciI	CCGC	2 cut(s)	140, 263
AclWI	GGATC	3 cut(s)	150, 290, 303
AcoI	YGGCCR	1 cut(s)	88
AcuI	CTGAAG	2 cut(s)	299, 353
AdeI	CACNNNGTG	1 cut(s)	214
AfaI	GTAC	1 cut(s)	475
AhlI	ACTAGT	1 cut(s)	161
AjiI	CACGTC	1 cut(s)	175
AloI	GAACNNNNNNTCC	2 cut(s)	435, 467
AluBI	AGCT	4 cut(s)	240, 283, 311, 368
AluI	AGCT	4 cut(s)	240, 283, 311, 368
AlwI	GGATC	3 cut(s)	150, 290, 303
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	80, 365
AsuHPI	GGTGA	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	67, 377
BccI	CCATC	2 cut(s)	404, 431
BclI	TGATCA	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	161
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	218
BisI	GCNGC	3 cut(s)	81, 264, 366
BlsI	GCNGC	3 cut(s)	82, 265, 367
BmgBI	CACGTC	1 cut(s)	175
BmiI	GGNNCC	3 cut(s)	297, 453, 497
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bse1I	ACTGG	2 cut(s)	194, 499
BseNI	ACTGG	2 cut(s)	194, 499
BseRI	GAGGAG	5 cut(s)	305, 414, 417, 420, 456
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	67, 377
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	64, 142, 295
BspACI	CCGC	2 cut(s)	140, 263
BspANI	GGCC	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	297, 453, 497
BspMI	ACCTGC	1 cut(s)	218
BspPI	GGATC	3 cut(s)	150, 290, 303
BsrI	ACTGG	2 cut(s)	194, 499
BssMI	GATC	3 cut(s)	64, 142, 295
Bst4CI	ACNGT	1 cut(s)	345
Bst6I	CTCTTC	2 cut(s)	4, 9
BstC8I	GCNNGC	1 cut(s)	43
BstKTI	GATC	3 cut(s)	67, 145, 298
BstMBI	GATC	3 cut(s)	64, 142, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	67, 377
BstX2I	RGATCY	2 cut(s)	142, 295
BstYI	RGATCY	2 cut(s)	142, 295
BsuRI	GGCC	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	187
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	474
CviJI	RGCY	7 cut(s)	90, 112, 240, 277, 283, 311, 368
CviKI_1	RGCY	7 cut(s)	90, 112, 240, 277, 283, 311, 368
CviQI	GTAC	1 cut(s)	474
DpnI	GATC	3 cut(s)	66, 144, 297
DpnII	GATC	3 cut(s)	64, 142, 295
DraIII	CACNNNGTG	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	2 cut(s)	4, 9
EarI	CTCTTC	2 cut(s)	4, 9
EciI	GGCGGA	1 cut(s)	155
Eco57I	CTGAAG	2 cut(s)	299, 353
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	3 cut(s)	81, 264, 366
Fsp4HI	GCNGC	3 cut(s)	81, 264, 366
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	3 cut(s)	81, 264, 366
HaeIII	GGCC	1 cut(s)	90
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	69, 392
Hpy188III	TCNNGA	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpySE526I	ACGT	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	64, 142, 295
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	4 cut(s)	175, 213, 300, 512
Lsp1109I	GCAGC	2 cut(s)	67, 377
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	3 cut(s)	66, 144, 297
MboI	GATC	3 cut(s)	64, 142, 295
MboII	GAAGA	3 cut(s)	21, 26, 31
MflI	RGATCY	2 cut(s)	142, 295
MhlI	GDGCHC	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	1 cut(s)	217
MluNI	TGGCCA	1 cut(s)	90
MmeI	TCCRAC	2 cut(s)	146, 370
Mox20I	TGGCCA	1 cut(s)	90
MscI	TGGCCA	1 cut(s)	90
MseI	TTAA	4 cut(s)	147, 326, 377, 491
Msp20I	TGGCCA	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	3 cut(s)	64, 142, 295
NlaIV	GGNNCC	3 cut(s)	297, 453, 497
PkrI	GCNGC	3 cut(s)	82, 265, 367
PspN4I	GGNNCC	3 cut(s)	297, 453, 497
PsuI	RGATCY	2 cut(s)	142, 295
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SaqAI	TTAA	4 cut(s)	147, 326, 377, 491
SatI	GCNGC	3 cut(s)	81, 264, 366
Sau3AI	GATC	3 cut(s)	64, 142, 295
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	9 cut(s)	177, 213, 232, 242, 285, 313, 370, 397, 453
SfcI	CTRYAG	1 cut(s)	312
SpeI	ACTAGT	1 cut(s)	161
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	2 cut(s)	140, 263
SspI	AATATT	1 cut(s)	32
SspMI	CTAG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	345
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	177
TasI	AATT	1 cut(s)	217
TatI	WGTACW	1 cut(s)	473
TauI	GCSGC	1 cut(s)	266
Tru1I	TTAA	4 cut(s)	147, 326, 377, 491
Tru9I	TTAA	4 cut(s)	147, 326, 377, 491
TscAI	CASTG	1 cut(s)	194
TseI	GCWGC	2 cut(s)	80, 365
TspDTI	ATGAA	1 cut(s)	497
TspRI	CASTG	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.